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Within cells, vesicles and proteins are actively transported several micrometers along the cytoskeletal filaments. The transport along microtubules is propelled by dynein and kinesin motors, which carry the cargo in opposite directions.…

Biological Physics · Physics 2020-05-20 Robin Jose , Ludger Santen

In this study, we describe the ratchet transport of particles under static asymmetric potential with periodicity. Ratchet transport has garnered considerable attention due to its potential for developing smart transport techniques on a…

Soft Condensed Matter · Physics 2019-12-11 Masayuki Hayakawa , Yusuke Kishino , Masahiro Takinoue

Using computer simulations, we study a two-dimensional system of sterically interacting self-mobile run-and-tumble disk-shaped particles with an underlying periodic quasi-one-dimensional asymmetric substrate, and show that a rich variety of…

Soft Condensed Matter · Physics 2017-12-06 D. McDermott , C. J. Olson Reichhardt , C. Reichhardt

Swarming or collective motion of living entities is one of the most common and spectacular manifestations of living systems having been extensively studied in recent years. A number of general principles have been established. The…

Cell Behavior · Quantitative Biology 2014-06-06 Elod Mehes , Tamas Vicsek

Cooperative jump motions are studied for mutually interacting particles in a one-dimensional periodic potential. The diffusion constant for the cooperative motion in systems including a small number of particles is numerically calculated…

Statistical Mechanics · Physics 2015-05-14 Hidetsugu Sakaguchi

From the formation of animal flocks to the emergence of coordinate motion in bacterial swarms, at all scales populations of motile organisms display coherent collective motion. This consistent behavior strongly contrasts with the difference…

Soft Condensed Matter · Physics 2013-11-11 Antoine Bricard , Jean-Baptiste Caussin , Nicolas Desreumaux , Olivier Dauchot , Denis Bartolo

Transitions between solid-like and fluid-like states in living tissues have been found in steps of embryonic development and in stages of disease progression. Our current understanding of these transitions has been guided by experimental…

Soft Condensed Matter · Physics 2024-11-20 Steven J. Chisolm , Emily Guo , Vignesh Subramaniam , Kyle D. Schulze , Thomas E. Angelini

We investigate the directional locking effects that arise when a monolayer of paramagnetic colloidal particles is driven across a triangular lattice of magnetic bubbles. We use an external rotating magnetic field to generate a two…

Soft Condensed Matter · Physics 2020-02-19 Ralph L. Stoop , Arthur V. Straube , Tom H Johansen , Pietro Tierno

Actomyosin networks are major structural components of the cell. They provide mechanical integrity and allow dynamic remodeling of eukaryotic cells, self-organizing into the diverse patterns essential for development. We provide a…

Biological Physics · Physics 2012-04-17 Shenshen Wang , Peter G. Wolynes

Collective actuation in active solids, the spontaneous condensation of the dynamics on a few elastic modes, takes place whenever the deformations of the structure reorient the forces exerted by the active units composing, or embedded in,…

Soft Condensed Matter · Physics 2025-11-21 Paul Baconnier , Vincent Démery , Olivier Dauchot

Ratchet effects can appear for particles interacting with an asymmetric potential under ac driving or for a thermal system in which a substrate is periodically flashed. Here, we show that a new type of collective ratchet effect can arise…

Soft Condensed Matter · Physics 2025-07-16 C. Reichhardt , C. J. O. Reichhardt

As engineering advances toward the nanoscale, understanding design principles for molecular motors becomes increasingly valuable. Many molecular motors consist of coupled components transducing one free-energy source into another. Here, we…

Statistical Mechanics · Physics 2026-02-09 Sara Iranbakhsh , David A. Sivak

We use cellular automata model to study the cooperation between cyclists. In the two-lane model, cyclists can change lanes. Even there is someone on the back they will take a cooperative attitude. It means that they will be in a same…

Cellular Automata and Lattice Gases · Physics 2011-10-14 Chi-Yu Wang , Li-Hu Wang , Ruo-Hang Chen

A Brownian particle's random motions can be rectified by a periodic potential energy landscape that alternates between two states, even if both states are spatially symmetric. If the two states differ only by a discrete translation, the…

Soft Condensed Matter · Physics 2009-11-11 Sang-Hyuk Lee , David G. Grier

Collective behavior in animals has long been modeled through self-propelled particle models, which reproduce striking group-level phenomena through abstract interaction forces. Yet these models are fundamentally descriptive: they leave open…

Robotics · Computer Science 2026-05-19 Vito Mengers , Bao Duc Cao , Oliver Brock

A novel mechanism of reaction-induced active molecular motion, not involving any kind of self-propulsion, is proposed and analyzed. Because of the momentum exchange with the surrounding solvent, conformational transitions in…

Soft Condensed Matter · Physics 2023-04-19 Hiroyuki Kitahata , Alexander S. Mikhailov

Adherent cells have long been known to display two modes during migration: a faster mode that is persistent in direction and a slower one where they turn. Compared to the persistent mode, the turns are less studied. Here we develop a simple…

Biological Physics · Physics 2025-05-23 Yiyu Zhang , Xiaoyu Yu , Boyuan Zheng , Ye Xu , Qihui Fan , Fangfu Ye , Da Wei

Many cellular processes require a polarization axis which generally initially emerges as an inhomogeneous distribution of molecular markers in the cell. We present a simple analytical model of a general mechanism of cell polarization taking…

Cell Behavior · Quantitative Biology 2009-10-21 Rhoda J. Hawkins , Olivier Benichou , Matthieu Piel , Raphael Voituriez

Active matter systems provide fascinating examples of pattern formation and collective motility without counterparts in equilibrium systems. Here, we employ Brownian dynamics simulations to study the collective motion and self-organization…

Soft Condensed Matter · Physics 2021-12-20 Leila Abbaspour , Ali Malek , Stefan Karpitschka , Stefan Klumpp

Escherichia coli swims using flagella activated by rotary motors. The direction of rotation of the motors is indirectly regulated by the binding of a single messenger protein. The conformational spread model has been shown to accurately…

Quantitative Methods · Quantitative Biology 2017-03-08 Alberto Pezzotta , Matteo Adorisio , Antonio Celani