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Related papers: Nucleation dynamics in 2d cylindrical Ising models…

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We numerically investigate nucleation processes in the transient dynamics of the two-dimensional complex Ginzburg-Landau equation towards its "frozen" state with quasi-stationary spiral structures. We study the transition kinetics from…

Statistical Mechanics · Physics 2019-11-27 Weigang Liu , Uwe C. Täuber

Mathematical and computational modelling in oncology has played an increasingly important role in not only understanding the impact of various approaches to treatment on tumour growth, but in optimizing dosing regimens and aiding the…

Tissues and Organs · Quantitative Biology 2025-07-03 Molly Brennan , Andrew L. Krause , Edgardo Villar-Sepúlveda , Christopher B. Prior

An interface description and numerical simulations of model A kinetics are used for the first time to investigate the intra-surface kinetics of phase ordering on corrugated surfaces. Geometrical dynamical equations are derived for the…

Statistical Mechanics · Physics 2015-06-25 Oliver Schoenborn , Rashmi C. Desai

We theoretically explore fluidization of epithelial tissues by active T1 neighbor exchanges. We show that the geometry of cell-cell junctions encodes important information about the local features of the energy landscape, which we support…

Soft Condensed Matter · Physics 2018-08-31 Matej Krajnc , Sabyasachi Dasgupta , Primož Ziherl , Jacques Prost

We experimentally investigate the nature of 2D phase transitions in a quasi-2D granular fluid. Using a surface decorated with periodically spaced dimples we observe interfacial tension between coexisting liquid and crystal phases.…

Soft Condensed Matter · Physics 2022-01-05 J. G. Downs , N. D. Smith , K. K. Mandadapu , J. P. Garrahan , M. I. Smith

In this paper, we develop a sharp interface tumor growth model to study the effect of the tumor microenvironment using a complex far-field geometry that mimics a heterogeneous distribution of vasculature. Together with different nutrient…

Numerical Analysis · Mathematics 2020-03-20 Min-Jhe Lu , Chun Liu , John Lowengrub , Shuwang Li

The stickiness effect suffered by chaotic orbits diffusing in the phase space of a dynamical system is studied in this paper. Previous works have shown that the hyperbolic structures in the phase space play an essential role in causing the…

Chaotic Dynamics · Physics 2012-12-18 Li-Yong ZHOU , Jian LI , Jian CHENG , Yi-Sui SUN

Using both analytical and simulational methods, we study low-temperature nucleation rates in kinetic Ising lattice-gas models that evolve under two different Arrhenius dynamics that interpose between the Ising states a transition state…

Statistical Mechanics · Physics 2007-05-23 Gloria M. Buendia , Per Arne Rikvold , Kyungwha Park , M. A. Novotny

Nematic liquid crystals confined to geometrically as well as chemically patterned substrate on one end and a flat substrate with strong anchoring on the other is studied using non-Boltzmann Monte Carlo methods. We observe significant…

Soft Condensed Matter · Physics 2010-10-18 D. Jayasri , Regina Jose , K. P. N. Murthy , V. S. S. Sastry

We investigate the energetics of droplets sourced by the thermal fluctuations in a system undergoing a first-order transition. In particular, we confine our studies to two dimensions with explicit calulations in the plane and on the sphere.…

Statistical Mechanics · Physics 2018-06-27 Eric M. Horsley , Maxim O. Lavrentovich , Randall D. Kamien

Mechanochemical patterns arising in the actomyosin cortex drive many cellular processes. Here we consider a hydrodynamic model for the actomyosin cortex of cells and study the sensitivity of the emergent patterns to both physical parameters…

Statistical Mechanics · Physics 2025-03-03 Jigyasa Watwani , Sakshi Pahujani , V Jemseena , Vishal Vasan , K Vijay Kumar

Inelastic collision dynamics between isolated gas-phase carbon monoxide molecules and low energetic electrons (< 50 eV) has been studied using state-of-the-art velocity map imaging apparatus and reported previously. These were based on data…

Atomic Physics · Physics 2021-11-16 Narayan Kundu , Dipayan Biswas , Vikrant Kumar , Anirban Paul , Dhananjay Nandi

The process of numerical thermalization in particle-in-cell (PIC) simulations has been studied extensively. It is analogous to Coulomb collisions in real plasmas, causing particle velocity distributions (VDFs) to evolve towards a Maxwellian…

For the first time the phenomenon of cellular structure coarsening are consistently analysed from the positions of kinetic, hydrodynamic and stochastodynamic theories of nonequilibrium statistical systems. Thereby micro-, meso- and…

Condensed Matter · Physics 2015-06-25 S. B. Goryachev

Heterogeneous nucleation is studied by Monte Carlo simulations and phenomenological theory, using the two-dimensional lattice gas model with suitable boundary fields. A chemical inhomogeneity of length b at one boundary favors the liquid…

Statistical Mechanics · Physics 2018-04-04 Marta L. Trobo , Ezequiel V. Albano , Kurt Binder

Chimeric antigen receptor T (CAR-T) cell therapy has emerged as a promising treatment for hematological malignancies, offering a targeted approach to cancer treatment. Understanding the complexities of CAR-T cell therapy within solid tumors…

Tissues and Organs · Quantitative Biology 2025-02-03 Silvia Bordel-Vozmediano , Soukaina Sabir , Lucía Benito-Barca , Bettina Weigelin , Víctor M. Pérez-García

We approximate a 2D Ising spin glass by tiling an infinite square lattice with large identical unit cells. The interactions within the unit cell are random. Each such sample shows one or more critical points. We examine the scaling of the…

Disordered Systems and Neural Networks · Physics 2009-10-30 David A Huse , Lee-Fen Ko

Multicanonical ensemble simulations for the simulation of first-order phase transitions suffer from exponential slowing down. Monte Carlo autocorrelation times diverge exponentially with free energy barriers $\Delta F$, which in $L^d$ boxes…

Statistical Mechanics · Physics 2007-05-23 Thomas Neuhaus , Johannes S. Hager

In development and homeostasis, multi-cellular systems exhibit spatial and temporal heterogeneity in their biochemical and mechanical properties. Nevertheless, it remains unclear how spatiotemporally heterogeneous forces affect the…

Soft Condensed Matter · Physics 2022-02-18 Takaki Yamamoto , Daniel M. Sussman , Tatsuo Shibata , M. Lisa Manning

Chemotaxis and haptotaxis have been a main theme in the macroscopic study of bacterial and cellular motility. In this work we investigate the influence these processes have on the shape and motility of fast migrating cells. We note that…

Cell Behavior · Quantitative Biology 2016-12-08 Aaron Brunk , Niklas Kolbe , Nikolaos Sfakianakis
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