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Molecular simulations of the forced unfolding and refolding of biomolecules or molecular complexes allow to gain important kinetic, structural and thermodynamic information about the folding process and the underlying energy landscape. In…

Soft Condensed Matter · Physics 2021-05-26 Marco Oestereich , Jürgen Gauss , Gregor Diezemann

For the study of complex synthetic and biological molecular systems by computer simulations one is still restricted to simple model systems or to by far too small time scales. To overcome this problem multiscale techniques are being…

Statistical Mechanics · Physics 2007-05-23 Matej Praprotnik , Kurt Kremer , Luigi Delle Site

Over the past decades, multiple gyrokinetic codes have shown to be able to simulate turbulence and associated transport in the core of Tokamak devices. However, their application to the edge and scrape-off layer (SOL) region presents…

Collisional and stochastic wave-particle dynamics in plasmas far from equilibrium are complex, temporally evolving, stochastic processes which are challenging to model. In this work, we extend previous methods coupling differentiable…

Plasma Physics · Physics 2026-04-27 Diogo D. Carvalho , Luis O. Silva , E. Paulo Alves

Cosmological simulations of structure formation follow the collisionless evolution of dark matter starting from a nearly homogeneous field at early times down to the highly clustered configuration at redshift zero. The density field is…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-28 Francesca Iannuzzi , Klaus Dolag

Particle dynamics are investigated in plasma turbulence, using self-consistent kinetic simulations, in two dimensions. In steady state, the trajectories of single protons and proton-pairs are studied, at different values of plasma "beta"…

Plasma Physics · Physics 2016-08-31 S. Servidio , C. T. Haynes , W. H. Matthaeus , D. Burgess , V. Carbone , P. Veltri

The discretization of velocity space plays a crucial role in the accuracy and efficiency of multiscale Boltzmann solvers. Conventional velocity space discretization methods suffer from uneven node distribution and mismatch issues, limiting…

Numerical Analysis · Mathematics 2025-11-04 Shanshan Dong , Lu Wang , Xiangxiang Chen , Guanqing Wang

Combined-resolution simulations are an effective way to study molecular properties across a range of length- and time-scales. These simulations can benefit from adaptive boundaries that allow the high-resolution region to adapt (change size…

Computational Physics · Physics 2018-05-09 Jason A. Wagoner , Vijay S. Pande

For plasma velocity space instabilities driven by particle distributions significantly deviated from a Maxwellian, weak collisions can damp the instabilities by an amount that is significantly beyond the collisional rate itself. This is…

Plasma Physics · Physics 2023-03-15 Yanzeng Zhang , Xian-Zhu Tang

Modern particle accelerators and their applications increasingly rely on precisely coordinated interactions of intense charged particle and laser beams. Femtosecond-scale synchronization alongside micrometre-scale spatial precision are…

An analytical description of the interface motion of a collapsing nanometer-sized spherical cavity in water is presented by a modification of the Rayleigh-Plesset equation in conjunction with explicit solvent molecular dynamics simulations.…

Soft Condensed Matter · Physics 2009-11-13 Joachim Dzubiella

A gyrokinetic Coulomb collision operator is derived, which is particularly useful to describe the plasma dynamics at the periphery region of magnetic confinement fusion devices. The derived operator is able to describe collisions occurring…

Plasma Physics · Physics 2019-11-05 R. Jorge , B. J. Frei , P. Ricci

Gravitational and hydrodynamical perturbations are analysed in a relativistic plasma containing a mixture of interacting fluids characterized by a non-negligible bulk viscosity coefficient. The energy-momentum transfer between the…

General Relativity and Quantum Cosmology · Physics 2009-11-11 Massimo Giovannini

The physical foundations of the dissipation of energy and the associated heating in weakly collisional plasmas are poorly understood. Here, we compare and contrast several measures that have been used to characterize energy dissipation and…

The derivation and numerical implementation of a linearized version of the gyrokinetic (GK) Coulomb collision operator (Jorge R. et al., J. Plasma Phys. 85, 905850604 (2019)) and of the widely-used linearized GK Sugama collision operator…

Plasma Physics · Physics 2022-02-15 B. J. Frei , J. Ball , A. C. D. Hoffmann , R. Jorge , P. Ricci , L. Stenger

The complex physics of the interaction between short pulse high intensity lasers and solids is so far hardly accessible by experiments. As a result of missing experimental capabilities to probe the complex electron dynamics and competing…

Intermittency of heating in weakly collisional plasma turbulence is an active subject of research, with significant potential impact on understanding of the solar wind, solar corona and astrophysical plasmas. Recent studies suggest a role…

Space Physics · Physics 2016-11-23 Tulasi N Parashar , William H Matthaeus

Continuum Vlasov simulations can be utilized for highly accurate modelling of fully kinetic plasmas. Great progress has been made recently regarding the applicability of the method in realistic plasma configurations. However, a reduction of…

Plasma Physics · Physics 2022-09-28 Florian Allmann-Rahn , Rainer Grauer , Katharina Kormann

A gyrokinetic linear stability analysis of a collisionless slab geometry in the local approximation is presented. We focus on $k_\parallel=0$ universal (or entropy) modes driven by plasma gradients at small and large plasma $\beta$. These…

Plasma Physics · Physics 2018-06-13 Barrett N. Rogers , Ben Zhu , Manaure Francisquez

We describe the implementation of kinetic solvers in 1d2v phase space using adaptive Cartesian mesh. Spherical coordinates in velocity space are used to simplify the Lorentz and Fokker-Planck collisional operators. The key capabilities of…

Computational Physics · Physics 2019-09-04 Vladimir Kolobov , Robert Arslanbekov , Dmitry Levko