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The alignment of biological sequences such as DNA, RNA, and proteins, is one of the basic tools that allow to detect evolutionary patterns, as well as functional/structural characterizations between homologous sequences in different…

Quantitative Methods · Quantitative Biology 2023-05-01 Louise Budzynski , Andrea Pagnani

Graphs provide an efficient tool for object representation in various computer vision applications. Once graph-based representations are constructed, an important question is how to compare graphs. This problem is often formulated as a…

Machine Learning · Statistics 2010-04-30 Mikhail Zaslavskiy , Francis Bach , Jean-Philippe Vert

Graph kernels have recently emerged as a promising approach for tackling the graph similarity and learning tasks at the same time. In this paper, we propose a general framework for designing graph kernels. The proposed framework capitalizes…

Machine Learning · Statistics 2018-08-09 Giannis Nikolentzos , Michalis Vazirgiannis

This paper proposes the first distributed algorithm that solves the weight-balancing problem using only finite rate and simplex communications among nodes, compliant with the directed nature of the graph edges. It is proved that the…

Optimization and Control · Mathematics 2020-03-03 Chang-Shen Lee , Nicolò Michelusi , Gesualdo Scutari

In this paper, we present a construction of a `matching sparsifier', that is, a sparse subgraph of the given graph that preserves large matchings approximately and is robust to modifications of the graph. We use this matching sparsifier to…

Data Structures and Algorithms · Computer Science 2018-11-08 Sepehr Assadi , Aaron Bernstein

Finding correspondences between shapes is a fundamental problem in computer vision and graphics, which is relevant for many applications, including 3D reconstruction, object tracking, and style transfer. The vast majority of correspondence…

Computer Vision and Pattern Recognition · Computer Science 2024-04-04 Maolin Gao , Zorah Lähner , Johan Thunberg , Daniel Cremers , Florian Bernard

In this work, we propose an adaptive sparse learning algorithm that can be applied to learn the physical processes and obtain a sparse representation of the solution given a large snapshot space. Assume that there is a rich class of…

Machine Learning · Computer Science 2022-07-26 Yating Wang , Wing Tat Leung , Guang Lin

Most graph neural networks follow the message passing mechanism. However, it faces the over-smoothing problem when multiple times of message passing is applied to a graph, causing indistinguishable node representations and prevents the…

Machine Learning · Computer Science 2023-02-06 Yunchong Song , Chenghu Zhou , Xinbing Wang , Zhouhan Lin

We present semantic attribute matching networks (SAM-Net) for jointly establishing correspondences and transferring attributes across semantically similar images, which intelligently weaves the advantages of the two tasks while overcoming…

Computer Vision and Pattern Recognition · Computer Science 2019-04-08 Seungryong Kim , Dongbo Min , Somi Jeong , Sunok Kim , Sangryul Jeon , Kwanghoon Sohn

We present a framework to define a large class of neural networks for which, by construction, training by gradient flow provably reaches arbitrarily low loss when the number of parameters grows. Distinct from the fixed-space global…

Optimization and Control · Mathematics 2025-01-13 David A. R. Robin , Kevin Scaman , Marc Lelarge

The multicut problem is an NP-hard combinatorial optimization problem with diverse applications in fields such as bioinformatics, data mining and computer vision. Graph neural networks have been defined for the multicut problem but can be…

Machine Learning · Computer Science 2026-05-14 Jannik Irmai , Lucas Fabian Naumann , Bjoern Andres

In spatial networks vertices are arranged in some space and edges may cross. When arranging vertices in a 1-dimensional lattice edges may cross when drawn above the vertex sequence as it happens in linguistic and biological networks. Here…

Discrete Mathematics · Computer Science 2020-02-24 Lluís Alemany-Puig , Ramon Ferrer-i-Cancho

Analyzing massive data sets has been one of the key motivations for studying streaming algorithms. In recent years, there has been significant progress in analysing distributions in a streaming setting, but the progress on graph problems…

Data Structures and Algorithms · Computer Science 2009-05-05 Kook Jin Ahn , Sudipto Guha

As one of the core technologies for 5G systems, massive multiple-input multiple-output (MIMO) introduces dramatic capacity improvements along with very high beamforming and spatial multiplexing gains. When developing efficient physical…

Information Theory · Computer Science 2023-11-01 Hengtao He , Xianghao Yu , Jun Zhang , Shenghui Song , Khaled B. Letaief

Neural embedding approaches have become a staple in the fields of computer vision, natural language processing, and more recently, graph analytics. Given the pervasive nature of these algorithms, the natural question becomes how to exploit…

Computation and Language · Computer Science 2020-10-27 Alexander Kalinowski , Yuan An

In many machine learning tasks, models are trained to predict structure data such as graphs. For example, in natural language processing, it is very common to parse texts into dependency trees or abstract meaning representation (AMR)…

Computation and Language · Computer Science 2022-01-25 Hoang Thanh Lam , Gabriele Picco , Yufang Hou , Young-Suk Lee , Lam M. Nguyen , Dzung T. Phan , Vanessa López , Ramon Fernandez Astudillo

The graph alignment problem aims to identify the vertex correspondence between two correlated graphs. Most existing studies focus on the scenario in which the two graphs share the same vertex set. However, in many real-world applications,…

Information Theory · Computer Science 2026-01-13 Chun Hei Michael Shiu , Hei Victor Cheng , Lele Wang

We propose a novel multi-scale message passing neural network algorithm for learning the solutions of time-dependent PDEs. Our algorithm possesses both temporal and spatial multi-scale resolution features by incorporating multi-scale…

Machine Learning · Computer Science 2023-02-08 Léonard Equer , T. Konstantin Rusch , Siddhartha Mishra

This paper studies the convergence rate of a message-passing distributed algorithm for solving a large-scale linear system. This problem is generalised from the celebrated Gaussian Belief Propagation (BP) problem for statistical learning…

Systems and Control · Electrical Eng. & Systems 2020-04-15 Zhaorong Zhang , Qianqian Cai , Minyue Fu

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli