Related papers: Tropical mixtures of star tree metrics
Tropical geometry with the max-plus algebra has been applied to statistical learning models over tree spaces because geometry with the tropical metric over tree spaces has some nice properties such as convexity in terms of the tropical…
We study the problem of how well a tree metric is able to preserve the sum of pairwise distances of an arbitrary metric. This problem is closely related to low-stretch metric embeddings and is interesting by its own flavor from the line of…
We study the tropicalization of the variety of symmetric rank two matrices. Analogously to the result of Markwig and Yu for general tropical rank two matrices, we show that it has a simplicial complex structure as the space of symmetric…
We investigate the rank of the average mixing matrix of trees, with all eigenvalues distinct. The rank of the average mixing matrix of a tree on $n$ vertices with $n$ distinct eigenvalues is upper-bounded by $\frac{n}{2}$. Computations on…
Dissimilarity measures for (possibly weighted) phylogenetic trees based on the comparison of their vectors of path lengths between pairs of taxa, have been present in the systematics literature since the early seventies. But, as far as…
Motivated by applications to low-rank matrix completion, we give a combinatorial characterization of the independent sets in the algebraic matroid associated to the collection of $m\times n$ rank-2 matrices and $n\times n$ skew-symmetric…
We investigate the tree gonality of a genus-$g$ metric graph, defined as the minimum degree of a tropical morphism from any tropical modification of the metric graph to a metric tree. We give a combinatorial constructive proof that this…
We investigate isometric embeddings of finite metric trees into $(\mathbb{R}^n,d_{1})$ and $( \mathbb{R}^n, d_{\infty})$. We prove that a finite metric tree can be isometrically embedded into $(\mathbb{R}^n,d_{1})$ if and only if the number…
We discuss a notion of convergence for binary trees that is based on subtree sizes. In analogy to recent developments in the theory of graphs, posets and permutations we investigate some general aspects of the topology, such as a…
Every finite metric tree has generalized roundness strictly greater than one. On the other hand, some countable metric trees have generalized roundness precisely one. The purpose of this paper is to identify some large classes of countable…
A metric tree ($M$, $d$), also known as $\mathbb{R}$-trees or $T$-theory, is a metric space such that between any two points there is an unique arc and that arc is isometric to an interval in $\mathbb{R}$. In this paper after presenting…
We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
We study the structure of trees minimizing their number of stable sets for given order $n$ and stability number $\alpha$. Our main result is that the edges of a non-trivial extremal tree can be partitioned into $n-\alpha$ stars, each of…
Abstractly, tropical hyperelliptic curves are metric graphs that admit a two-to-one harmonic morphism to a tree. They also appear as embedded tropical curves in the plane arising from triangulations of polygons with all interior lattice…
We characterize the extremal trees that maximize the number of almost-perfect matchings, which are matchings covering all but one or two vertices, and those that maximize the number of strong almost-perfect matchings, which are matchings…
We introduce and study three different notions of tropical rank for symmetric and dissimilarity matrices in terms of minimal decompositions into rank 1 symmetric matrices, star tree matrices, and tree matrices. Our results provide a close…
The tree-metric theorem provides a necessary and sufficient condition for a dissimilarity matrix to be a tree metric, and has served as the foundation for numerous distance-based reconstruction methods in phylogenetics. Our main result is…
Given a tree of weighted vertices, it is sometimes possible to break the tree into two equally-weighted subtrees within an allowable error. We give a fast algorithm that finds an edge which breaks the tree into equal-weight components or…
We show that an infinite weighted tree admits a bi-Lipschitz embedding into Hilbert space if and only if it does not contain arbitrarily large complete binary trees with uniformly bounded distortion. We also introduce a new metric invariant…