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New technologies have enabled the investigation of biology and human health at an unprecedented scale and in multiple dimensions. These dimensions include a myriad of properties describing genome, epigenome, transcriptome, microbiome,…

Quantitative Methods · Quantitative Biology 2018-10-22 Marinka Zitnik , Francis Nguyen , Bo Wang , Jure Leskovec , Anna Goldenberg , Michael M. Hoffman

Model-based approaches for image reconstruction, analysis and interpretation have made significant progress over the last decades. Many of these approaches are based on either mathematical, physical or biological models. A challenge for…

Computer Vision and Pattern Recognition · Computer Science 2019-10-01 Daniel Rueckert , Julia A. Schnabel

Synthetic data is becoming increasingly integral in data-scarce fields such as medical imaging, serving as a substitute for real data. However, its inherent statistical characteristics can significantly impact downstream tasks, potentially…

Computer Vision and Pattern Recognition · Computer Science 2024-12-23 Krishan Agyakari Raja Babu , Rachana Sathish , Mrunal Pattanaik , Rahul Venkataramani

In the 21st century, many of the crucial scientific and technical issues facing humanity can be understood as problems associated with understanding, modelling, and ultimately controlling complex systems: systems comprised of a large number…

Information Theory · Computer Science 2025-01-20 Thomas F. Varley

Within the past few decades we have witnessed digital revolution, which moved scholarly communication to electronic media and also resulted in a substantial increase in its volume. Nowadays keeping track with the latest scientific…

Digital Libraries · Computer Science 2017-10-30 Dominika Tkaczyk

Heterogeneous, interconnected, systems-level, molecular data have become increasingly available and key in precision medicine. We need to utilize them to better stratify patients into risk groups, discover new biomarkers and targets,…

Other Quantitative Biology · Quantitative Biology 2024-05-17 Natasa Przulj , Noel Malod-Dognin

We present a novel system providing summaries for Computer Science publications. Through a qualitative user study, we identified the most valuable scenarios for discovery, exploration and understanding of scientific documents. Based on…

The exponential increase in academic publications has made it increasingly difficult for researchers to remain up to date and systematically synthesize knowledge scattered across vast and fragmented research domains. Literature reviews,…

Digital Libraries · Computer Science 2025-06-12 Kiran Sharmaa , Parul Khurana , Ziya Uddina

There is significant growth and interest in the use of synthetic data as an enabler for machine learning in environments where the release of real data is restricted due to privacy or availability constraints. Despite a large number of…

Machine Learning · Computer Science 2020-11-25 Harrison Wilde , Jack Jewson , Sebastian Vollmer , Chris Holmes

Foundation models in digital pathology use massive datasets to learn useful compact feature representations of complex histology images. However, there is limited transparency into what drives the correlation between dataset size and…

Bioinformatics research is characterized by voluminous and incremental datasets and complex data analytics methods. The machine learning methods used in bioinformatics are iterative and parallel. These methods can be scaled to handle big…

Computational Engineering, Finance, and Science · Computer Science 2015-06-17 Hirak Kashyap , Hasin Afzal Ahmed , Nazrul Hoque , Swarup Roy , Dhruba Kumar Bhattacharyya

The production of microchips is a complex and thus well documented process. Therefore, available textual data about the production can be overwhelming in terms of quantity. This affects the visibility and retrieval of a certain piece of…

Information Retrieval · Computer Science 2021-05-12 H. Abu-Rasheed , C. Weber , J. Zenkert , P. Czerner , R. Krumm , M. Fathi

There is a great concern nowadays regarding alcohol consumption and drug abuse, especially in young people. Analyzing the social environment where these adolescents are immersed, as well as a series of measures determining the alcohol abuse…

Data-intensive physics facilities are increasingly reliant on heterogeneous and large-scale data processing and computational systems in order to collect, distribute, process, filter, and analyze the ever increasing huge volumes of data…

High Energy Physics - Experiment · Physics 2022-03-21 Rainer Bartoldus , Catrin Bernius , David W. Miller

As a special case of common object removal, image person removal is playing an increasingly important role in social media and criminal investigation domains. Due to the integrity of person area and the complexity of human posture, person…

Computer Vision and Pattern Recognition · Computer Science 2022-09-30 Yunliang Jiang , Chenyang Gu , Zhenfeng Xue , Xiongtao Zhang , Yong Liu

Extracting information from functional magnetic resonance (fMRI) images has been a major area of research for more than two decades. The goal of this work is to present a new method for the analysis of fMRI data sets, that is capable to…

Biclustering is an unsupervised data mining technique that aims to unveil patterns (biclusters) from gene expression data matrices. In the framework of this thesis, we propose new biclustering algorithms for microarray data. The latter is…

Machine Learning · Computer Science 2018-11-26 Amina Houari

The exponential growth of multimedia information and the development of various communication media generated new problems at various levels including the rate of flow of information, problems of storage and management. The difficulty which…

Information Retrieval · Computer Science 2007-11-21 Hanène Maghrebi , Amos David

The Web has become a potentially infinite information resource, turning into an essential tool for many daily activities. This resulted in an increase in the amount of information available in users' contexts that is not taken into account…

Information Retrieval · Computer Science 2018-10-11 Carlos M. Lorenzetti

The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…

Other Quantitative Biology · Quantitative Biology 2025-01-24 Himanshu Buckchash , Gyanendra Kumar Verma , Dilip K. Prasad