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We return to the geometry optimization problem of Lennard-Jones clusters to analyze the performance dependence of "cut and splice" genetic algorithms (GAs) on the employed population size. We generally find that admixing twinning mutation…

Materials Science · Physics 2015-05-13 Vladimir A. Froltsov , Karsten Reuter

We propose genetic algorithms, which are robust optimization techniques inspired by natural selection, to enhance the versatility of digital quantum simulations. In this sense, we show that genetic algorithms can be employed to increase the…

Quantum Physics · Physics 2016-06-22 U. Las Heras , U. Alvarez-Rodriguez , E. Solano , M. Sanz

Genetic Algorithms (GA) are a class of metaheuristic global optimization methods inspired by the process of natural selection among individuals in a population. Despite their widespread use, a comprehensive theoretical analysis of these…

Optimization and Control · Mathematics 2025-02-24 Giacomo Borghi , Lorenzo Pareschi

The execution of Grover's quantum search algorithm needs rather limited resources without much fine tuning. Consequently, the algorithm can be implemented in a variety of physical set-ups, which involve wave dynamics but may not need other…

Quantum Physics · Physics 2021-07-08 Apoorva D. Patel

In this paper we introduce adaptation mechanism based on genetic algorithms in minority games. If agents find their performances too low, they modify their strategies in hope to improve their performances and become more successful. One aim…

Statistical Mechanics · Physics 2009-11-10 Marko Sysi-Aho , Anirban Chakraborti , Kimmo Kaski

We introduce genetic algorithms as a means to analyze supernovae type Ia data and extract model-independent constraints on the evolution of the Dark Energy equation of state. Specifically, we will give a brief introduction to the genetic…

Cosmology and Nongalactic Astrophysics · Physics 2010-01-15 C. Bogdanos , Savvas Nesseris

Replication of DNA and synthesis of proteins are studied from the view-point of quantum database search. Identification of a base-pairing with a quantum query gives a natural (and first ever) explanation of why living organisms have 4…

Quantum Physics · Physics 2009-11-06 Apoorva Patel

This article is devoted to applications of projection operators to simulate phenomenological properties of the molecular-genetic code system. Oblique projection operators are under consideration, which are connected with matrix…

Other Quantitative Biology · Quantitative Biology 2017-08-10 Sergey Petoukhov

Among the evolutionary methods, one that is quite prominent is Genetic Programming, and, in recent years, a variant called Geometric Semantic Genetic Programming (GSGP) has shown to be successfully applicable to many real-world problems.…

Neural and Evolutionary Computing · Computer Science 2022-05-06 Mauro Castelli , Luca Manzoni , Luca Mariot , Giuliamaria Menara , Gloria Pietropolli

Protein structure prediction (PSP) is computationally a very challenging problem. The challenge largely comes from the fact that the energy function that needs to be minimised in order to obtain the native structure of a given protein is…

Computational Engineering, Finance, and Science · Computer Science 2013-11-18 Mahmood A. Rashid , M. A. Hakim Newton , Md. Tamjidul Hoque , Abdul Sattar

Evolutionary algorithms rely very heavily on randomized behavior. Execution speed, therefore, depends strongly on how we implement randomness, such as our choice of pseudorandom number generator, or the algorithms used to map pseudorandom…

Neural and Evolutionary Computing · Computer Science 2024-12-04 Vincent A. Cicirello

Genetic programming is a powerful heuristic search technique that is used for a number of real world applications to solve among others regression, classification, and time-series forecasting problems. A lot of progress towards a theoretic…

Neural and Evolutionary Computing · Computer Science 2013-09-24 Gabriel Kronberger , Stephan Winkler , Michael Affenzeller , Andreas Beham , Stefan Wagner

Genetic algorithms are considered as an original way to solve problems, probably because of their generality and of their "blind" nature. But GAs are also unusual since the features of many implementations (among all that could be thought…

Artificial Intelligence · Computer Science 2011-08-24 Jean-Louis Dessalles

The rapid advances in the field of optimization methods in many pure and applied science pose the difficulty of keeping track of the developments as well as selecting an appropriate technique that best suits the problem in-hand. From a…

Neural and Evolutionary Computing · Computer Science 2011-12-30 Loris Serafino

Gravitational-wave detection strategies are based on a signal analysis technique known as matched filtering. Despite the success of matched filtering, due to its computational cost, there has been recent interest in developing deep…

General Relativity and Quantum Cosmology · Physics 2022-11-03 Dwyer S. Deighan , Scott E. Field , Collin D. Capano , Gaurav Khanna

Genetic algorithms are a well-known method for tackling the problem of variable selection. As they are non-parametric and can use a large variety of fitness functions, they are well-suited as a variable selection wrapper that can be applied…

Machine Learning · Statistics 2016-04-25 Chee Chun Gan , Gerard Learmonth

Thin-film solar cells are predominately designed similar to a stacked structure. Optimizing the layer thicknesses in this stack structure is crucial to extract the best efficiency of the solar cell. The commonplace method used in…

Neural and Evolutionary Computing · Computer Science 2020-04-08 Premkumar Vincent , Gwenaelle Cunha Sergio , Jaewon Jang , In Man Kang , Jaehoon Park , Hyeok Kim , Minho Lee , Jin-Hyuk Bae

Algorithms for machine learning-guided design, or design algorithms, use machine learning-based predictions to propose novel objects with desired property values. Given a new design task -- for example, to design novel proteins with high…

Machine Learning · Computer Science 2025-07-04 Clara Fannjiang , Ji Won Park

In this report a systematic approach is used to determine the approximate genetic network and robust dependencies underlying differentiation. The data considered is in the form of a binary matrix and represent the expression of the nine…

Molecular Networks · Quantitative Biology 2007-05-23 Radhakrishnan Nagarajan , Jane E. Aubin , Charlotte A. Peterson

Boolean functions are mathematical objects with numerous applications in domains like coding theory, cryptography, and telecommunications. Finding Boolean functions with specific properties is a complex combinatorial optimization problem…

Neural and Evolutionary Computing · Computer Science 2023-02-14 Marko Djurasevic , Domagoj Jakobovic , Luca Mariot , Stjepan Picek