Related papers: Shapes of RNA pseudoknot structures

For each $n\geq2$ we construct an unbounded closed pseudoconcave complete pluripolar set $\mathcal E$ in $\mathbb C^n$ which contains no analytic variety of positive dimension (we call it a \textit{Wermer type set}). We also construct an…

It has been well accepted that the RNA secondary structures of most functional non-coding RNAs (ncRNAs) are closely related to their functions and are conserved during evolution. Hence, prediction of conserved secondary structures from…

Let $k:E\times E\to [0,\infty)$ be a non-negative measurable function on some locally compact separable metric space $E$. We provide some simple conditions such that the quadratic form with jump kernel $k$ becomes a regular lower bounded…

We comment on structural properties of the algebras $\mathfrak{A}_{LQG/LQC}$ underlying loop quantum gravity and loop quantum cosmology, especially the representation theory, relating the appearance of the (dynamically induced)…

We initiate a systematic study of four dimensional $\mathcal{N}=2$ superconformal field theories (SCFTs) based on the analysis of their Coulomb branch geometries. Because these SCFTs are not uniquely characterized by their scale-invariant…

We show how to construct an N=1 superconformal vertex algebra (SCVA) from any Riemannian manifold. When the Riemannian manifold has special holonomy groups, we discuss the extended supersymmetry. When the manifold is complex or K\"{a}hler,…

We study a generating function for the sum over fatgraphs with specified valences of vertices and faces, inversely weighted by the order of their symmetry group. A compact expression is found for general (i.e. non necessarily connected)…

Analyzing the structure of proteins is a key part of understanding their functions and thus their role in biology at the molecular level. In addition, design new proteins in a methodical way is a major engineering challenge. In this work,…

We consider new series expansions for variants of the so-termed ordinary geometric square series generating functions originally defined in the recent article titled "Square Series Generating Function Transformations" (arXiv: 1609.02803).…

Influence of two type of spin structures on the form of the Fermi surface (FS) and a photoemission intensity map is studied for t-t'-U Hubbard model. Mean field calculations are done for the stripe phase and for the spiral spin structure.…

Due to the hierarchical organization of RNA structures and their pivotal roles in fulfilling RNA functions, the formation of RNA secondary structure critically influences many biological processes and has thus been a crucial research topic.…

We construct non-critical pure spinor superstrings in two, four and six dimensions. We find explicitly the map between the RNS variables and the pure spinor ones in the linear dilaton background. The RNS variables map onto a patch of the…

In biology, predicting RNA secondary structures plays a vital role in determining its physical and chemical properties. Although we have powerful energy models to predict them as well as parametric analysis to understand the models…

The main purpose of the paper is to study hyperkahler structures from the viewpoint of symplectic geometry. We introduce a notion of hypersymplectic structures which encompasses that of hyperkahler structures. Motivated by the work of…

Modelled on a real hypersurface in a quaternionic manifold, we introduce a quaternionic analogue of CR structure, called quaternionic CR structure. We define the strong pseudoconvexity of this structure as well as the notion of quaternionic…

In this paper, the structured pseudospectrum of non-archimedean matrices and structured pseudospectrum of non-archimedean matrix pencils are introduced. Many results are proved about them and we give a few examples.

The main purpose of this paper is providing a systematic study and classification of non-scalar kernels for Reproducing Kernel Hilbert Spaces (RKHS), to be used in the analysis of deformation in shape spaces endowed with metrics induced by…

We report measurements of the exclusive electroproduction of $K^+\Lambda$ and $K^+\Sigma^0$ final states from an unpolarized proton target using the CLAS detector at the Thomas Jefferson National Accelerator Facility. The separated…

We study the eigenvalues of the Kohn Laplacian on a closed embedded strictly pseudoconvex CR manifold as functionals on the set of positive oriented pseudohermitian structures $\mathcal{P}_{+}$. We show that the functionals are continuous…

Let $\Sigma$ be a surface with negative Euler characteristic, genus at least one and at most one boundary component. We prove that the skein algebra of $\Sigma$ over the field of rational functions can be algebraically generated by a finite…