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A single semiflexible polymer chain folds into a toroidal object under poor solvent conditions. In this study, we examined the morphological change in such a toroidal state as a function of the width and stiffness of the chain together with…

Biological Physics · Physics 2016-09-08 Y. Takenaka , Y. Yoshikawa , Y. Koyama , T. Kanbe , K. Yoshikawa

Many variants of RNA, DNA, and even proteins can be considered semiflexible polymers, where bending stiffness, as a type of energetic penalty, competes with attractive van der Waals forces in structure formation processes. Here, we…

Soft Condensed Matter · Physics 2023-06-07 Dilimulati Aierken , Michael Bachmann

We demonstrate experimentally the fine lateral circular birefringence of a tunable birefringent polymer, the first example of the spin Hall effect of light in a polymeric material. We report experimental observations of this effect using…

Optics · Physics 2018-03-13 Osamu Takayama , Graciana Puentes

Ring polymers are prevalent in natural and engineered systems, including circular bacterial DNA, crown ethers for cation chelation, and mechanical nanoswitches. The morphology and dynamics of ring polymers are governed by the chemistry and…

Chemical Physics · Physics 2018-02-07 Jiang Wang , Andrew Ferguson

Depletion forces and macromolecular crowding govern the structure and function of biopolymers in biological cells and the properties of polymer nanocomposite materials. To isolate and analyze the influence of polymer shape fluctuations and…

Soft Condensed Matter · Physics 2016-02-25 Wei Kang Lim , Alan R. Denton

In this paper, we analyze the effect of geometrical constraint on the conformational properties of an infinitely long linear semiflexible polymer chain confined in-between two constraints under good solvent condition in two dimensions. The…

Soft Condensed Matter · Physics 2020-12-29 Pramod Kumar Mishra

The conformational statistics of ring polymers in melts or dense solutions is strongly affected by their quenched microscopic topological state. The effect is particularly strong for untangled (i.e. non-concatenated and unknotted) rings,…

Soft Condensed Matter · Physics 2019-03-14 Raoul D. Schram , Angelo Rosa , Ralf Everaers

We investigate wrinkling of two-dimensional random and triangular semiflexible polymer networks under shear. Both types of semiflexible networks exhibit wrinkling above a small critical shear angle, which scales with an exponent of the…

Soft Condensed Matter · Physics 2014-06-06 Pascal Müller , Jan Kierfeld

We consider a model of an extensible semiflexible filament moving in two dimensions on a motility assay of motor proteins represented explicitly as active harmonic linkers. Their heads bind stochastically to polymer segments within a…

Biological Physics · Physics 2021-08-31 Amir Shee , Nisha Gupta , Abhishek Chaudhuri , Debasish Chaudhuri

Kinetics of conformational change of a semiflexible polymer under mechanical external field were investigated with Langevin dynamics simulations. It is found that a semiflexible polymer exhibits large hysteresis in mechanical…

Soft Condensed Matter · Physics 2009-11-10 Natsuhiko Yoshinaga , Kenichi Yoshikawa , Takao Ohta

We propose new polymer models for Monte Carlo simulation and apply them to a polymer chain confined in a relatively thin box which has both curved and flat sides, and show that either an ideal or an excluded-volume chain spends more time in…

Soft Condensed Matter · Physics 2007-05-23 Y. Y. Suzuki , T. Dotera , M. Hirabayashi

The size of rings (also called cyclic polymers) in bidisperse blends of chemically identical rings is analyzed by computer simulations. Data of entangled ring blends and blends of interpenetrating rings are compared and it is shown that the…

Soft Condensed Matter · Physics 2021-03-31 Michael Lang

The nonequilibrium structural and dynamical properties of semiflexible active polar polymers subject to linear flow are studied by numerical simulations. Filaments are confined in two dimensions and immersed in a fluid described by the…

Soft Condensed Matter · Physics 2026-04-23 A. Lamura , R. G. Winkler

Monodisperse circular disks have been collectively packed in confined geometries using a Monte Carlo method where the compaction is propelled by two- dimensional stochastic agitation. We have found that confinement (i.e., finite-size plus…

Mesoscale and Nanoscale Physics · Physics 2012-02-01 Bjoern Arnold , Ayse Turak , Alejandro Diaz Ortiz

The role of solvent quality in determining the universal material properties of dilute polymer solutions undergoing steady simple shear flow is examined. A bead-spring chain representation of the polymer molecule is used, and the influence…

Soft Condensed Matter · Physics 2020-07-03 K. Satheesh Kumar , J. Ravi Prakash

We analyze the Bianchi IX Universe in the Polymer Quantum Mechanics framework by facing both semiclassical and purely quantum effects near the cosmological singularity. We adopt Misner variables to describe the model dynamics, applying the…

General Relativity and Quantum Cosmology · Physics 2019-12-03 Eleonora Giovannetti , Giovanni Montani

We study the static properties of a semiflexible polymer exposed to a quenched random environment by means of computer simulations. The polymer is modeled as two-dimensional Heisenberg chain. For the random environment we consider hard…

Soft Condensed Matter · Physics 2012-11-20 Sebastian Schoebl , Johannes Zierenberg , Wolfhard Janke

The statistical mechanics of polymer loops entangled in the two-dimensional array of randomly distributed obstacles of infinite length is discussed. The area of the loop projected to the plane perpendicular to the obstacles is used as a…

Condensed Matter · Physics 2009-10-28 Matthias Otto , Thomas A. Vilgis

The nature of the globule-coil transition of surface-confined polymers has been an issue of debate. Here this 2D collapse transition is studied through a partially directed lattice model. In the general case of polymers with positive…

Soft Condensed Matter · Physics 2007-05-23 Haijun Zhou , Jie Zhou , Zhong-Can Ou-Yang , Sanjay Kumar

Insight in the crumpling or compaction of one-dimensional objects is of great importance for understanding biopolymer packaging and designing innovative technological devices. By compacting various types of wires in rigid confinements and…

Soft Condensed Matter · Physics 2020-04-21 M. Reza Shaebani , Javad Najafi , Ali Farnudi , Daniel Bonn , Mehdi Habibi