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Many biological molecular motors and machines are driven by chemical reactions that occur in specific catalytic sites. We study whether the arrival of molecules to such an active site can be accelerated by the presence of a nearby inactive…

Statistical Mechanics · Physics 2025-01-06 Hila Katznelson , Saar Rahav

Kinetics of model catalytic processes proceeding on inhomogeneous surfaces is studied. We employ an extended mean-field model that takes into account surface inhomogeneities. The influence of surface diffusion of adsorbent on the kinetics…

Materials Science · Physics 2009-11-13 Lukasz Cwiklik

In this paper we study the Poisson stick model in two dimensional hyperbolic space $\mathbb{H}^2,$ where the sticks all have length $L.$ Typically, percolation models in hyperbolic space undergo two phase transitions as the intensity…

Probability · Mathematics 2025-12-18 Erik I. Broman , Johan H. Tykesson

We develop an analytical diffusion-equation-type approximation scheme for the one-dimensional coagulation reaction A+A->A with partial reaction probability on particle encounters which are otherwise hard-core. The new approximation…

Condensed Matter · Physics 2010-10-12 V. Privman , C. R. Doering , H. L. Frisch

We study a model that generalizes the CP with diffusion. An additional transition is included in the model so that at a particular point of its phase diagram a crossover from the directed percolation to the compact directed percolation…

Statistical Mechanics · Physics 2009-11-11 W. G. Dantas , J. F. Stilck

A system formed by a crowded environment of catalytic obstacles and complex oscillatory chemical reactions is inquired. The obstacles are static spheres of equal radius, which are placed in a random way. The chemical reactions are carried…

Chemical Physics · Physics 2018-12-05 Carlos Echeverria , José L. Herrera , Kay Tucci , Orlando Alvarez-Llamoza , Miguel Morales

In deposition with a poisoning species, we show that the transition to a blocked or pinned phase may be viewed as an absorbing transition in the directed percolation (DP) class. We consider a ballistic-like deposition model with an active…

Statistical Mechanics · Physics 2009-11-07 F. D. A. Aarão Reis

We investigate the catalytic reactions model used in cell modeling. The reaction kinetic is defined through the energies of different species of molecules following random independent distribution. The related statistical physics model has…

Other Quantitative Biology · Quantitative Biology 2015-06-12 David B. Saakian , Laurent Schwartz

The steady-state phase diagram of the one-dimensional reaction-diffusion model 2A -> 3A, 2A -> 0 is studied through the non-hermitian density matrix renormalization group. In the absence of single-particle diffusion the model reduces to the…

Statistical Mechanics · Physics 2009-10-31 Enrico Carlon , Malte Henkel , Ulrich Schollwoeck

A hybrid mesoscopic multi-particle collision model is used to study diffusion-influenced reaction kinetics. The mesoscopic particle dynamics conserves mass, momentum and energy so that hydrodynamic effects are fully taken into account.…

Chemical Physics · Physics 2007-05-23 Kay Tucci , Raymond Kapral

Text-book concepts of diffusion- versus kinetic-control are well-defined for reaction-kinetics involving macroscopic concentrations of diffusive reactants that are adequately described by rate-constants -- the inverse of the…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Ralf Metzler , Gleb Oshanin

Models of reaction diffusion processes usually employ discrete lattice models with particles interacting at the same site, resulting in localized reactions in the continuum limit. Here, various non-local interactions are considered, and two…

Mathematical Physics · Physics 2026-03-30 Chris D Greenman

We study a d-dimensional lattice model of diffusing coalescing massive particles, with two parameters controlling deposition and evaporation of monomers. The unique stationary distribution for the system exhibits a phase transition in all…

Probability · Mathematics 2016-08-09 Colm Connaughton , R. Rajesh , Roger Tribe , Oleg Zaboronski

Drastic change in dynamics and statistics in a chemical reaction system, induced by smallness in the molecule number, is reported. Through stochastic simulations for random catalytic reaction networks, transition to a novel state is…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 Akinori Awazu , Kunihiko Kaneko

Phase transitions of reaction-diffusion systems with site occupation restriction and with particle creation that requires n=3,4 parents, whereas explicit diffusion of single particles (A) is present are investigated in low dimensions by…

Statistical Mechanics · Physics 2009-11-07 Geza Odor

We show that a certain model for the spread of an infection has a phase transition in the recuperation rate. The model is as follows: There are particles or individuals of type A and type B, interpreted as healthy and infected,…

Probability · Mathematics 2007-05-23 Harry Kesten , Vladas Sidoravicius

We study nonequilibrium phase transitions of reaction-diffusion systems defined on randomly diluted lattices, focusing on the transition across the lattice percolation threshold. To develop a theory for this transition, we combine classical…

Statistical Mechanics · Physics 2009-04-27 Man Young Lee , Thomas Vojta

Using a fermionic renormalization group approach we analyse a model where the electrons diffusing on a quantum dot interact via Fermi-liquid interactions. Describing the single-particle states by Random Matrix Theory, we find that…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 Ganpathy Murthy , Harsh Mathur

An important component in studying mathematical models in many biochemical systems, such as those found in developmental biology, is phase transition. The purpose of this work is to analyze the phase transition property of a…

Analysis of PDEs · Mathematics 2013-12-19 Masoud Yari

Diffusion limited reaction of the Lotka-Volterra type is analyzed taking into account the discrete nature of the reactants. In the continuum approximation, the dynamics is dominated by an elliptic fixed-point. This fixed-point becomes…

Condensed Matter · Physics 2016-08-31 Eldad Bettelheim , Oded Agam , Nadav M. Shnerb
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