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Signal processing (SP) techniques convert DNA and protein sequences into information that lead to successful drug discovery. One must, however, be aware about the difference between information and entropy1. Eight other physical properties…

Molecular Networks · Quantitative Biology 2007-05-23 Stan Bumble

Symbolic regression is essential for deriving interpretable expressions that elucidate complex phenomena by exposing the underlying mathematical and physical relationships in data. In this paper, we present an advanced symbolic regression…

Machine Learning · Computer Science 2025-03-13 Sikai Huang , Yixin Berry Wen , Tara Adusumilli , Kusum Choudhary , Haizhao Yang

Symbolic music analysis tasks are often performed by models originally developed for Natural Language Processing, such as Transformers. Such models require the input data to be represented as sequences, which is achieved through a process…

Information Retrieval · Computer Science 2025-01-09 Dinh-Viet-Toan Le , Louis Bigo , Mikaela Keller

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches…

Quantitative Methods · Quantitative Biology 2023-06-09 Francesco Ceccarelli , Lorenzo Giusti , Sean B. Holden , Pietro Liò

A number of signal processing and statistical methods can be used in analyzing either pieces of text or DNA sequences. These techniques can be used in a number of ways, such as determining authorship of documents, finding genes in DNA, and…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Matthew J. Berryman , Andrew Allison , Pedro Carpena , Derek Abbott

In a regression task, a function is learned from labeled data to predict the labels at new data points. The goal is to achieve small prediction errors. In symbolic regression, the goal is more ambitious, namely, to learn an interpretable…

Machine Learning · Computer Science 2025-06-25 Paul Kahlmeyer , Joachim Giesen , Michael Habeck , Henrik Voigt

Signal processing is a fundamental component of almost any sensor-enabled system, with a wide range of applications across different scientific disciplines. Time series data, images, and video sequences comprise representative forms of…

An increasing number of scientific applications are making use of irregular data access patterns. An important class of such patterns involve subscripted-subscripts, wherein an array value appears in the index expression of another array.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-15 Akshay Bhosale , Rudolf Eigenmann

In this paper, we consider the problem of event classification with multi-variate time series data consisting of heterogeneous (continuous and categorical) variables. The complex temporal dependencies between the variables combined with…

Machine Learning · Computer Science 2016-12-06 Shengdong Zhang , Soheil Bahrampour , Naveen Ramakrishnan , Mohak Shah

Symbolic data analysis (SDA) is an emerging area of statistics concerned with understanding and modelling data that takes distributional form (i.e. symbols), such as random lists, intervals and histograms. It was developed under the premise…

Computation · Statistics 2020-04-09 Boris Beranger , Huan Lin , Scott A. Sisson

Computer Algebra Systems (e.g. Maple) are used in research, education, and industrial settings. One of their key functionalities is symbolic integration, where there are many sub-algorithms to choose from that can affect the form of the…

Machine Learning · Computer Science 2024-04-24 Rashid Barket , Matthew England , Jürgen Gerhard

Machine learning models are routinely integrated into process mining pipelines to carry out tasks like data transformation, noise reduction, anomaly detection, classification, and prediction. Often, the design of such models is based on…

Machine Learning · Computer Science 2024-02-21 Paolo Ceravolo , Sylvio Barbon Junior , Ernesto Damiani , Wil van der Aalst

What types of numeric representations emerge in neural systems, and what would a satisfying answer to this question look like? In this work, we interpret Neural Network (NN) solutions to sequence based number tasks using a variety of…

Machine Learning · Computer Science 2025-08-19 Satchel Grant , Noah D. Goodman , James L. McClelland

Many scientific problems require to process data in the form of geometric graphs. Unlike generic graph data, geometric graphs exhibit symmetries of translations, rotations, and/or reflections. Researchers have leveraged such inductive bias…

Machine Learning · Computer Science 2022-02-23 Jiaqi Han , Yu Rong , Tingyang Xu , Wenbing Huang

In science, we are interested not only in forecasting but also in understanding how predictions are made, specifically what the interpretable underlying model looks like. Data-driven machine learning technology can significantly streamline…

Symbolic Computation · Computer Science 2025-05-29 Weiting Liu , Jiaxu Cui , Jiao Hu , En Wang , Bo Yang

Many cognitive neuroscience studies use large feature sets to predict and interpret brain activity patterns. Feature sets take many forms, from human stimulus annotations to representations in deep neural networks. Of crucial importance in…

Neurons and Cognition · Quantitative Biology 2022-12-07 Anna A. Ivanova , Martin Schrimpf , Stefano Anzellotti , Noga Zaslavsky , Evelina Fedorenko , Leyla Isik

Mining tasks over sequential data, such as clickstreams and gene sequences, require a careful design of embeddings usable by learning algorithms. Recent research in feature learning has been extended to sequential data, where each instance…

Machine Learning · Computer Science 2020-07-28 Zhongfang Zhuang , Xiangnan Kong , Elke Rundensteiner , Jihane Zouaoui , Aditya Arora

A symbolic method for solving linear recurrences of combinatorial and statistical interest is introduced. This method essentially relies on a representation of polynomial sequences as moments of a symbol that looks as the framework of a…

Combinatorics · Mathematics 2021-01-22 E. Di Nardo , D. Senato

Semantic communication, leveraging advanced deep learning techniques, emerges as a new paradigm that meets the requirements of next-generation wireless networks. However, current semantic communication systems, which employ neural coding…

Information Theory · Computer Science 2025-08-20 Hai-Long Qin , Jincheng Dai , Sixian Wang , Xiaoqi Qin , Shuo Shao , Kai Niu , Wenjun Xu , Ping Zhang

Procedural models (i.e. symbolic programs that output visual data) are a historically-popular method for representing graphics content: vegetation, buildings, textures, etc. They offer many advantages: interpretable design parameters,…