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Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

Complex systems are often driven by higher-order interactions among multiple units, naturally represented as hypergraphs. Understanding dependency structures within these hypergraphs is crucial for understanding and predicting the behavior…

Social and Information Networks · Computer Science 2025-05-29 John Hood , Caterina De Bacco , Aaron Schein

Across all scales of the physical world, dynamical systems can often be usefully represented as abstract networks that encode the system's units and inter-unit interactions. Understanding how physical rules shape the topological structure…

Mesoscale and Nanoscale Physics · Physics 2023-11-28 Abigail N. Poteshman , Mathieu Ouellet , Lee C. Bassett , Danielle S. Bassett

Network inference has been extensively studied in several fields, such as systems biology and social sciences. Learning network topology and internal dynamics is essential to understand mechanisms of complex systems. In particular, sparse…

Machine Learning · Statistics 2022-06-13 Yasen Wang , Junyang Jin , Jorge Goncalves

This works explores and illustrates recent results developed by the author in field of dynamical network analysis. The considered approach is blind, i.e., no a priori assumptions on the interconnected systems are available. Moreover, the…

Systems and Control · Computer Science 2015-03-19 Giacomo Innocenti

Topological concepts have been employed to understand the ground states of many strongly correlated systems, but it is still quite unclear if and how topology manifests itself in the relaxation dynamics. Here we uncover emergent topological…

Quantum Gases · Physics 2025-03-31 Wang Huang , Xu-Chen Yang , Rui Cao , Ying-Hai Wu , Jianmin Yuan , Yongqiang Li

In the framework of on nonassociative geometry, we introduce a new effective model that extends the statistical treatment of complex networks with hidden geometry. The small-world property of the network is controlled by nonlocal curvature…

Physics and Society · Physics 2020-03-11 Alexander I. Nesterov , Pablo Héctor Mata Villafuerte

We introduce a family of neural quantum states for the simulation of strongly interacting systems in the presence of spatial periodicity. Our variational state is parameterized in terms of a permutationally-invariant part described by the…

Quantum Physics · Physics 2022-05-31 Gabriel Pescia , Jiequn Han , Alessandro Lovato , Jianfeng Lu , Giuseppe Carleo

Finding accurate reduced descriptions for large, complex, dynamically evolving networks is a crucial enabler to their simulation, analysis, and, ultimately, design. Here we propose and illustrate a systematic and powerful approach to…

Chaotic Dynamics · Physics 2017-05-02 Tom Bertalan , Yan Wu , Carlo Laing , C. William Gear , Ioannis G. Kevrekidis

We develop a variational method to obtain many-body ground states of the Bose-Hubbard model using feedforward artificial neural networks. A fully-connected network with a single hidden layer works better than a fully-connected network with…

Disordered Systems and Neural Networks · Physics 2018-01-17 Hiroki Saito , Masaya Kato

Bayesian networks are powerful statistical models to study the probabilistic relationships among set random variables with major applications in disease modeling and prediction. Here, we propose a continuous time Bayesian network with…

Machine Learning · Computer Science 2021-07-16 Syed Hasib Akhter Faruqui , Adel Alaeddini , Jing Wang , Carlos A. Jaramillo

A model for growing networks is introduced, having as a main ingredient that new nodes are attached to the network through one existing node and then explore the network through the links of the visited nodes. From exact calculations of two…

Statistical Mechanics · Physics 2007-05-23 Alexei Vazquez

Complex network theory has been used to study complex systems. However, many real-life systems involve multiple kinds of objects . They can't be described by simple graphs. In order to provide complete information of these systems, we…

Physics and Society · Physics 2015-11-10 Jin-Li Guo , Xin-Yun Zhu

Network scientists often use complex dynamic processes to describe network contagions, but tools for fitting contagion models typically assume simple dynamics. Here, we address this gap by developing a nonparametric method to reconstruct a…

Social and Information Networks · Computer Science 2024-10-10 Nicholas W. Landry , William Thompson , Laurent Hébert-Dufresne , Jean-Gabriel Young

Discrete dynamic models are a powerful tool for the understanding and modeling of large biological networks. Although a lot of progress has been made in developing analysis tools for these models, there is still a need to find approaches…

Molecular Networks · Quantitative Biology 2013-06-14 Jorge G. T. Zañudo , Réka Albert

A large variety of dynamical systems, such as chemical and biomolecular systems, can be seen as networks of nonlinear entities. Prediction, control, and identification of such nonlinear networks require knowledge of the state of the system.…

Optimization and Control · Mathematics 2018-06-27 Aleksandar Haber , Ferenc Molnar , Adilson E. Motter

Boolean networks have been successfully used in modelling gene regulatory networks. In this paper we propose a reduction method that reduces the complexity of a Boolean network but keeps dynamical properties and topological features and…

Quantitative Methods · Quantitative Biology 2009-07-06 Alan Veliz-Cuba

A novel unified Bayesian framework for network detection is developed, under which a detection algorithm is derived based on random walks on graphs. The algorithm detects threat networks using partial observations of their activity, and is…

Social and Information Networks · Computer Science 2014-09-09 Steven T. Smith , Edward K. Kao , Kenneth D. Senne , Garrett Bernstein , Scott Philips

Complex network states are characterized by the interplay between system's structure and dynamics. One way to represent such states is by means of network density matrices, whose von Neumann entropy characterizes the number of distinct…

Physics and Society · Physics 2022-12-06 Arsham Ghavasieh , Manlio De Domenico

This work is dedicated to the topological analysis of complex transitional networks for dynamic state detection. Transitional networks are formed from time series data and they leverage graph theory tools to reveal information about the…

Machine Learning · Statistics 2023-08-08 Audun D. Myers , Max M. Chumley , Firas A. Khasawneh , Elizabeth Munch