Related papers: Tree Orbits under Permutation Group Action: Algori…

We introduce a Poisson variety compatible with a cluster algebra structure and a compatible toric action on this variety. We study Poisson and topological properties of the union of generic orbits of this toric action. In particular, we…

This paper focuses on vertices of the master corner polyhedra $P(G,g_0),$ the core of the group-theoretical approach to integer linear programming. We introduce two combinatorial operations that transform each vertex of $P(G,g_0)$ to…

We study actions of finitely generated groups on $\bbR$-trees under some stability hypotheses. We prove that either the group splits over some controlled subgroup (fixing an arc in particular), or the action can be obtained by gluing…

Using a group-theoretic approach, a method for determining the equivalence classes (also called orbits) of the set of rules of one-dimensional cellular automata induced by the symmetry operations of reflection and permutation and their…

In this article, we study the space of subgroups of non-amenable generalized Baumslag-Solitar groups (GBS groups) of rank $d$, that is, groups acting cocompactly on an oriented tree with vertex and edge stabilizers isomorphic to…

The circular descent of a permutation $\sigma$ is a set $\{\sigma(i)\mid \sigma(i)>\sigma(i+1)\}$. In this paper, we focus on the enumerations of permutations by the circular descent set. Let $cdes_n(S)$ be the number of permutations of…

This survey may be seen as an introduction to the use of toric and tropical geometry in the analysis of plane curve singularities, which are germs $(C,o)$ of complex analytic curves contained in a smooth complex analytic surface $S$. The…

Counting non-isomorphic tree-like multigraphs that include self-loops and multiple edges is an important problem in combinatorial enumeration, with applications in chemical graph theory, polymer science, and network modeling. Traditional…

Given a complete graph with positive weights on its edges, we define the weight of a subset of edges as the product of weights of the edges in the subset and consider sums (partition functions) of weights over subsets of various kinds:…

Every irreducible odd dimensional representation of the $n$'th symmetric or hyperoctahedral group, when restricted to the $(n-1)$'th, has a unique irreducible odd-dimensional constituent. Furthermore, the subgraph induced by odd-dimensional…

We consider groups that act on spherically symmetric rooted trees and study the associated representation of the group on the space of locally constant functions on the boundary of the tree. We introduce and discuss the new notion of…

Let $H$ be a subgroup of a finite non-abelian group $G$ and $g \in G$. Let $Z(H, G) = \{x \in H : xy = yx, \forall y \in G\}$. We introduce the graph $\Delta_{H, G}^g$ whose vertex set is $G \setminus Z(H, G)$ and two distinct vertices $x$…

This manuscript represents the author's PhD dissertation thesis.The first part studies decision problems in Thompson's groups F,T,V and some generalizations. The simultaneous conjugacy problem is determined to be solvable for Thompson's…

Combinatorial Hopf algebras of trees exemplify the connections between operads and bialgebras. Painted trees were introduced recently as examples of how graded Hopf operads can bequeath Hopf structures upon compositions of coalgebras. We…

Let $\phi$ be a function that maps any non-empty subset $A$ of $\mathbb{R}^2$ to a non-empty subset $\phi(A)$ of $\mathbb{R}^2$. A $\phi$-cover of a set $T=\{T_1, T_2, \dots, T_m\}$ of pairwise non-crossing trees in the plane is a set of…

The reassembling of a simple connected graph G = (V,E) is an abstraction of a problem arising in earlier studies of network analysis. The reassembling process has a simple formulation (there are several equivalent formulations) relative to…

Let $T$ be a tree with induced partial order $\preceq$. We investigate centered Gaussian processes $X=(X_t)_{t\in T}$ represented as $$ X_t=\sigma(t)\sum_{v \preceq t}\alpha(v)\xi_v $$ for given weight functions $\alpha$ and $\sigma$ on $T$…

Combinatorial objects such as rooted trees that carry a recursive structure have found important applications recently in both mathematics and physics. We put such structures in an algebraic framework of operated semigroups. This framework…

Understanding the pathways by which viral capsid proteins assemble around their genomes could identify key intermediates as potential drug targets. In this work we use computer simulations to characterize assembly over a wide range of…

Molecular simulations of the self-assembly of cone-shaped particles with specific, attractive interactions are performed. Upon cooling from random initial conditions, we find that the cones self assemble into clusters and that clusters…