Related papers: Fast and Compact Prefix Codes

While achieving a compression ratio of 2.0 bits/base, the new algorithm codes non-N bases in fixed length. It dramatically reduces the time of coding and decoding than previous DNA compression algorithms and some universal compression…

Many proofs in discrete mathematics and theoretical computer science are based on the probabilistic method. To prove the existence of a good object, we pick a random object and show that it is bad with low probability. This method is…

We prove that a uniformly random automaton with $n$ states on a 2-letter alphabet has a synchronizing word of length $O(n^{1/2}\log n)$ with high probability (w.h.p.). That is to say, w.h.p. there exists a word $\omega$ of such length, and…

The test-and-set object is a fundamental synchronization primitive for shared memory systems. A test-and-set object stores a bit, initialized to 0, and supports one operation, test&set(), which sets the bit's value to 1 and returns its…

Over any discrete memoryless channel, we build codes such that: for one, their block error probabilities and code rates scale like random codes'; and for two, their encoding and decoding complexities scale like polar codes'. Quantitatively,…

Traditional error-correcting codes (ECCs) assume a fixed message length, but many scenarios involve ongoing or indefinite transmissions where the message length is not known in advance. For example, when streaming a video, the user should…

For some applications where the speed of decoding and the fault tolerance are important, like in video storing, one of the successful answers is Fix-Free Codes. These codes have been applied in some standards like H.263+ and MPEG-4. The…

An \emph{indeterminate string} $x = x[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$; $x$ is said to be \emph{regular} if every subset is of size one. A proper substring $u$ of regular $x$ is said to be a…

We show how to build several data structures of central importance to string processing, taking as input the Burrows-Wheeler transform (BWT) and using small extra working space. Let $n$ be the text length and $\sigma$ be the alphabet size.…

The \v{C}ern\'y conjecture states that every $n$-state synchronizing automaton has a reset word of length at most $(n-1)^2$. We study the hardness of finding short reset words. It is known that the exact version of the problem, i.e.,…

In this paper, we design a new succinct static dictionary with worst-case constant query time. A dictionary data structure stores a set of key-value pairs with distinct keys in $[U]$ and values in $[\sigma]$, such that given a query $x\in…

We describe a method for lossless quantum compression if the output of the information source is not known. We compute the best possible compression rate, minimizing the expected base length of the output quantum bit string (the base length…

Given a positive \(\epsilon \leq 1\) and read-only access to a string \(S [1..n]\) whose LZ77 parse consists of $z$ phrases, with high probability we can build an LZ77-like parse of $S$ that consists of $\Oh{z / \epsilon}$ phrases using…

Given a dynamic set $K$ of $k$ strings of total length $n$ whose characters are drawn from an alphabet of size $\sigma$, a keyword dictionary is a data structure built on $K$ that provides locate, prefix search, and update operations on…

In this paper we address the longest common extension (LCE) problem: to compute the length $\ell$ of the longest common prefix between any two suffixes of $T\in \Sigma^n$ with $ \Sigma = \{0, \ldots \sigma-1\} $. We present two fast and…

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

We address the problem of constructing a fast lossless code in the case when the source alphabet is large. The main idea of the new scheme may be described as follows. We group letters with small probabilities in subsets (acting as super…

A locally decodable code (LDC) C:{0,1}^k -> {0,1}^n is an error correcting code wherein individual bits of the message can be recovered by only querying a few bits of a noisy codeword. LDCs found a myriad of applications both in theory and…

Motivated by average-case trace reconstruction and coding for portable DNA-based storage systems, we initiate the study of \emph{coded trace reconstruction}, the design and analysis of high-rate efficiently encodable codes that can be…

Motivated by distributed storage applications, we investigate the degree to which capacity achieving encodings can be efficiently updated when a single information bit changes, and the degree to which such encodings can be efficiently…