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The linking and writhing numbers are key quantities when characterizing the structure of a piece of supercoiled DNA. Defined as double integrals over the shape of the double-helix, these numbers are not always straightforward to compute,…

Soft Condensed Matter · Physics 2008-10-22 S. Neukirch , E. L. Starostin

In a recent article, Zikic {\it et al.} [Phys. Rev. E {\bf 74}, 011919 (2006)] present first-principles calculations of the DNA nucleotides electrical conductance. They report qualitative and quantitative differences with previous work, in…

Soft Condensed Matter · Physics 2009-11-11 Johan Lagerqvist , Michael Zwolak , Massimiliano Di Ventra

This reply tries to rectify some misunderstandings that are in our opinion contained in the Comment by Campostrini and Rossi, <hep-lat 99407008> on our paper <hep-lat 9407003>.

High Energy Physics - Lattice · Physics 2007-05-23 A. Patrascioiu , E. Seiler

In a recent paper, Vink et al. analyzed some spectropolarimetry data of O-type stars. Here we comment on our disagreement with some points presented in this paper, with the hope of helping to fully grasp the scientific implication of these…

Solar and Stellar Astrophysics · Physics 2010-02-03 Y. Naze , G. Rauw

Present day data allow significant reconsideration of ideas on mechanisms underlying the degeneracy in the genetic code. Here a hypothesis is presented which links the degeneracy to possible conformational alterations in the codon-anticodon…

Biological Physics · Physics 2013-10-14 Denis A. Semyonov

This note rebuts an old, but recurring claim by Antoniou, Davis and Diakonos [1] that the critical point and associated critical exponents reported in Ref. [2], is based on an erroneous treatment of scaling relations near the critical…

Nuclear Experiment · Physics 2016-07-11 Roy A. Lacey

The Comment by Markenscoff that criticizes a recent dynamic extension of the Peierls-Nabarro equation [Y.-P. Pellegrini, Phys. Rev. B 81, 024101 (2010)] is refuted by means of simple examples that illustrate the interest of using an…

Materials Science · Physics 2011-02-10 Yves-Patrick Pellegrini

The comment is intended to answer the criticism presented on `Steady-state fluctuations of a genetic feedback loop: an exact solution' [J. Chem. Phys. {\bf 137}, 035104 (2012).] and provides the missing component for the complete analytic…

Subcellular Processes · Quantitative Biology 2013-02-22 Guilherme C. P. Innocentini , Alexandre F. Ramos , José Eduardo M. Hornos

This talk is a natural continuation of that given by V.Vereshagin at this conference. We discuss some details not covered in that talk and review the calculational technique using the (\pi N)-elastic scattering as an example. Finally, we…

High Energy Physics - Phenomenology · Physics 2007-05-23 A. Vereshagin

It is demonstrated that the recently proposed pseudoclassical model for Weyl particles [1] (D.M. Gitman, A.E. Goncalves and I.V. Tyutin, Phys. Rev. D 50 (1994) 5439) is classically inconsistent. A possible way of removing the classical…

High Energy Physics - Theory · Physics 2007-05-23 Jose L. Cortes , Mikhail S. Plyushchay

The Comment by Aifantis that criticizes the article 'On non-singular crack fields in Helmholtz type enriched elasticity theories' [Lazar, M., Polyzos, D., 2014. Int. J. Solids Struct. doi: 10.1016/j.ijsolstr.2014.01.002] is refuted by means…

Materials Science · Physics 2015-04-06 Markus Lazar , Eleni Agiasofitou , Demosthenes Polyzos

It is shown that the results of ref [1] are consistent.

Quantum Physics · Physics 2009-10-30 T. K. Jana , P. Roy

Because of the double-helical structure of DNA, in which two strands of complementary nucleotides intertwine around each other, a covalently closed DNA molecule with no interruptions in either strand can be viewed as two interlocked…

Biomolecules · Quantitative Biology 2015-05-13 Lauren A. Britton , Wilma K. Olson , Irwin Tobias

We point out that the main theorem of Ref2 := [Adv. Math. 407, Article ID 108564, 22 p. (2022)] is included in the prior research survey Ref1 := [Expo. Math., 40(2), 265-301, 2022]. For context, we also reproduce the rather simple proof…

Functional Analysis · Mathematics 2022-11-10 José Luis Romero

Understanding human dynamics is of major scientific and practical importance and can be increasingly addressed in a quantitative fashion thanks to electronic records capturing various human activity patterns. The authors of Ref. [1] revisit…

Data Analysis, Statistics and Probability · Physics 2007-05-23 A. -L. Barabasi , K. -I. Goh , A. Vazquez

We prove a stronger version of a conjecture stated in a paper from 2017 by J. M. Ash and S. Catoiu concerning relations between various notions of the Lipschitz property and differentiability in the Euclidean plane. We also provide an…

Classical Analysis and ODEs · Mathematics 2023-06-12 David Hruška

This expository paper is a tribute to Ekkehart Kr\"oner's results on the intrinsic non-Riemannian geometrical nature of a single crystal filled with point and/or line defects. A new perspective on this old theory is proposed, intended to…

Differential Geometry · Mathematics 2010-10-19 Nicolas Van Goethem

This short note points out two of the incongruences that I find in the Loredo (2012) comments on Andreon (2012), i.e. on my chapter written for the book "Astrostatistical Challenges for the New Astronomy". First, I find illogic the Loredo…

Instrumentation and Methods for Astrophysics · Physics 2012-08-28 S. Andreon

A comment has been recently posted on the arXiv (arXiv:1902.07504) that discuss our recent work on encircling multiple exceptional points in Nat. Commun. 9, 4808 (2018). In that comment, the authors claim that our approach is prone to…

Quantum Physics · Physics 2019-03-19 Q. Zhong , M. Khajavikhan , D. N. Christodoulides , R. El-Ganainy

This article is a thorough critique to the Plakhutin-Davidson's comments made to our paper published in the recent year. A detailed critical examination of the arguments that led to the suggested comments by Plakhutin and Davidson reveals…

General Physics · Physics 2008-09-09 I. I. Guseinov
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