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In Sphingomonas CHY-1, a single ring-hydroxylating dioxygenase is responsible for the initial attack of a range of polycyclic aromatic hydrocarbons (PAHs) composed of up to five rings. The components of this enzyme were separately purified…

Biomolecules · Quantitative Biology 2009-04-22 Yves Jouanneau , Christine Meyer , Jean Jakoncic , V. Stojanoff , Jacques Gaillard

Covalently functionalizing mechanical exfoliated monolayer and bilayer graphenides with {\lambda}-iodanes led to the discovery that the monolayers supported on a SiO2 substrate are considerably more reactive than bilayers as demonstrated by…

Initial reactions involved in the bacterial degradation of polycyclic aromatic hydrocarbons (PAHs) include a ring-dihydroxylation catalyzed by a dioxygenase and a subsequent oxidation of the dihydrodiol products by a dehydrogenase. In this…

Biomolecules · Quantitative Biology 2009-04-24 Yves Jouanneau , Christine Meyer

Polycyclic hydrocarbons have received great attention due to their potential role in organic electronics and, for open-shell systems with unpaired electron densities, in spintronics and da-ta storage. However, the intrinsic instability of…

The two-component flavin-dependent monooxygenases belong to an emerging class of enzymes involved in oxidation reactions in a number of metabolic and biosynthetic pathways in microorganisms. One component is a NAD(P)H:flavin oxidoreductase,…

Biomolecules · Quantitative Biology 2015-01-08 Julien Valton , Laurent Filisetti , Marc Fontecave , Vincent Nivière

We investigated trioxatriangulenium functionalized with phenyl (phenyl-TOTA) on the (111) surfaces of Ag and Au using low-temperature scanning tunneling microscopy (STM) and density functional theory (DFT). On Ag(111), the molecules form…

Materials Science · Physics 2025-11-12 Behzad Mortezapour , Sebastian Hamer , Rainer Herges , Roberto Robles , Richard Berndt

Interactions and structure of alkanone, or alkanal or dialkyl carbonate + alkane mixtures, or of 2-alkanone+ 2-alkanone, or of ketone + dialkyl carbonate systems have been investigated by means of a set of thermodynamic properties and by…

The quaternary structure of Filamin A (FLNa) 16-23 was recently shown to exhibit multiple domain-domain interactions that lead to a propeller-like construction. Here we present single molecule force spectroscopy experiments to show a wide…

Biological Physics · Physics 2013-05-08 Tianyou Xu , Herbert Lannon , Sebastein Wolf , Fumihiko Nakamura , Jasna Brujic

The synthesis of complex oligosaccharides is desired for their potential as prebiotics, and their role in the pharmaceutical and food industry. Levansucrase (LS, EC 2.4.1.10), a fructosyl-transferase, can catalyze the synthesis of these…

Quantitative Methods · Quantitative Biology 2020-08-12 Andrea Hill , Salwa Karboune , Tarun Narwani , Alexandre de Brevern

Fluorobenzene, or 1,4-difluorobenzene or hexafluorobenzene + alkane mixtures and hexafluorobenzene + benzene, or + toluene, or + 1,4-dimethylbenzene systems have been studied using thermodynamic properties from the literature and through…

Hydrogenation of graphene on the \alpha-quartz (0001) SiO_2 substrate is studied, considering different surface terminations in order to take into account the amorphic nature of the material. Our ab initio calculations show that the…

Mesoscale and Nanoscale Physics · Physics 2012-01-16 P. Havu , M. Ijäs , A. Harju

Carbon allotropes have a large family of materials with varieties of crystal structures and properties and can realize different topological phases. Using first principles calculations, we predict a new two-dimensional (2D) carbon…

Materials Science · Physics 2019-12-06 Heng Gao , Wei Ren

Comprehensive first-principles calculations are performed on diverse arrangements of relevant chemical defects in fluorographene to provide accurate microscopic insights into the process of graphene fluorination. The minimum energy paths…

Mesoscale and Nanoscale Physics · Physics 2022-08-17 Tahereh Malakoutikhah , S. Javad Hashemifar , Mojtaba Alaei

Theoretical calculations under the scheme of WIEN2k computer package had been performed on the pristine compound LaOFeAs, as well as on LaO1-xFxFeAs. One factor crucial to the manifestation of superconductivity seems to be fluorine doping;…

Superconductivity · Physics 2008-11-24 A. Reyes-Serrato , D. H. Galvan , G. Soto

Triangulenes are open-shell triangular graphene flakes with total spin increasing with their size. In the last years, on-surface-synthesis strategies have permitted fabricating and engineering triangulenes of various sizes and structures…

The relationship between sequence variation and phenotype is poorly understood. Here we use metabolomic analysis to elucidate the molecular mechanism underlying the filamentous phenotype of E. coli strains that carry destabilizing mutations…

Biomolecules · Quantitative Biology 2020-12-18 Sanchari Bhattacharyyaa , Shimon Bershtein , Bharat V. Adkara , Jaie Woodarda , Eugene I. Shakhnovich

Genetic inactivation of essential genes creates an evolutionary scenario distinct from escape from drug inhibition, but the mechanisms of microbe adaptations in such cases remain unknown. Here we inactivate E. coli dihydrofolate reductase…

Populations and Evolution · Quantitative Biology 2019-02-19 João V. Rodrigues , Eugene Shakhnovich

The family Asteraceae include large number of Centaurea species which have been applied in folk medicine. One of the family Asteraceae members is the Centaurea damascena which authentically been tested for its antibacterial activity. The…

Quantitative Methods · Quantitative Biology 2019-11-19 Mohammad Jaafreh , Haitham Qaralleh , Muhamad O. Al-limoun

Although ferroelectric compounds containing hydrogen bonds were among the first to be discovered, organic ferroelectrics are relatively rare. The discovery of high polarization at room temperature in croconic acid [Nature \textbf{463}, 789…

Enhancement of the chemical activity of graphene is evidenced by first-principles modelling of chemisorption of the hydrogen, fluorine, oxygen and hydroxyl groups on strained graphene. For the case of negative strain or compression,…

Materials Science · Physics 2012-05-04 Danil W. Boukhvalov , Young-Woo Son
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