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The Ward numbers $W(n,k)$ combinatorially enumerate set partitions with block sizes $\geq 2$ and phylogenetic trees (total partition trees). We prove that $W(n,k)$ also counts \emph{increasing Schr\"oder trees} by verifying they satisfy…
By a well known result the treewidth of k-outerplanar graphs is at most 3k-1. This paper gives, besides a rigorous proof of this fact, an algorithmic implementation of the proof, i.e. it is shown that, given a k-outerplanar graph G, a tree…
If a (cusped) surface S admits an ideal triangulation T with no shears, we show an efficient algorithm to give S as a quotient of hypebolic plane by a subgroup of PSL(2, Z). The algorithm runs in time O(n log n), where n is the number of…
We give an algorithm to calculate the minimal and maximal genus of the orientable closed surface where a graph $G$ can be embedded. For this, we construct some special branched coverings of the 2-sphere. We apply this algorithm to calculate…
In the Steiner Tree problem we are given an undirected edge-weighted graph as input, along with a set $K$ of vertices called terminals. The task is to output a minimum-weight connected subgraph that spans all the terminals. The famous…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
In biology, a phylogenetic tree is a tool to represent the evolutionary relationship between species. Unfortunately, the classical Schr\"oder tree model is not adapted to take into account the chronology between the branching nodes. In…
We propose a new unifying framework, Birch SGD, for analyzing and designing distributed SGD methods. The central idea is to represent each method as a weighted directed tree, referred to as a computation tree. Leveraging this…
We consider the problem of learning the structure of undirected graphical models with bounded treewidth, within the maximum likelihood framework. This is an NP-hard problem and most approaches consider local search techniques. In this…
We give an $O(g^{1/2} n^{3/2} + g^{3/2} n^{1/2})$-size extended formulation for the spanning tree polytope of an $n$-vertex graph embedded on a surface of genus $g$, improving on the known $O(n^2 + g n)$-size extended formulations following…
We study the problem of decomposing (clustering) a tree with respect to costs attributed to pairs of nodes, so as to minimize the sum of costs for those pairs of nodes that are in the same component (cluster). For the general case and for…
We give an algorithm that, given an $n$-vertex graph $G$ and an integer $k$, in time $2^{O(k)} n$ either outputs a tree decomposition of $G$ of width at most $2k + 1$ or determines that the treewidth of $G$ is larger than $k$. This is the…
In the point set embeddability problem, we are given a plane graph $G$ with $n$ vertices and a point set $S$ with $n$ points. Now the goal is to answer the question whether there exists a straight-line drawing of $G$ such that each vertex…
In the longest plane spanning tree problem, we are given a finite planar point set $\mathcal{P}$, and our task is to find a plane (i.e., noncrossing) spanning tree for $\mathcal{P}$ with maximum total Euclidean edge length. Despite more…
Some skew-symmetrizable integer exchange matrices are associated to ideal (tagged) triangulations of marked bordered surfaces. These exchange matrices admits unfoldings to skew-symmetric matrices. We develop an combinatorial algorithm that…
Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…
We consider the problem of counting straight-edge triangulations of a given set $P$ of $n$ points in the plane. Until very recently it was not known whether the exact number of triangulations of $P$ can be computed asymptotically faster…
Decision trees and randomized forests are widely used in computer vision and machine learning. Standard algorithms for decision tree induction optimize the split functions one node at a time according to some splitting criteria. This greedy…
We investigate slicings of combinatorial manifolds as properly embedded co-dimension 1 submanifolds. A focus is given to dimension 3 where slicings are normal surfaces. In the case of 2-neighborly 3-manifolds and quadrangulated slicings, a…
Phylogenetic networks are a generalization of phylogenetic trees that are used in biology to represent reticulate or non-treelike evolution. Recently, several algorithms have been developed which aim to construct phylogenetic networks from…