English
Related papers

Related papers: ITM Probe: analyzing information flow in protein n…

200 papers

Partially-observed data collected by sampling methods is often being studied to obtain the characteristics of information diffusion networks. However, these methods usually do not consider the behavior of diffusion process. In this paper,…

Social and Information Networks · Computer Science 2014-05-30 Motahareh Eslami Mehdiabadi , Hamid R. Rabiee , Mostafa Salehi

As network research becomes more sophisticated, it is more common than ever for researchers to find themselves not studying a single network but needing to analyze sets of networks. An important task when working with sets of networks is…

Social and Information Networks · Computer Science 2019-07-26 James P. Bagrow , Erik M. Bollt

The modern information environment (MIE) is increasingly complex, shaped by a wide range of techniques designed to satisfy users' information needs. Information seeking (IS) models are effective mechanisms for characterizing user-system…

Information Retrieval · Computer Science 2025-10-10 Shuoqi Sun , Danula Hettiachchi , Damiano Spina

MOTIVATION: Proteins fold into complex structures that are crucial for their biological functions. Experimental determination of protein structures is costly and therefore limited to a small fraction of all known proteins. Hence, different…

Biomolecules · Quantitative Biology 2018-04-18 David Menéndez Hurtado , Karolis Uziela , Arne Elofsson

Internet of Things (IoT) defines a network of devices connected to the internet and sharing a massive amount of data between each other and a central location. These IoT devices are connected to a network therefore prone to attacks. Various…

Networking and Internet Architecture · Computer Science 2021-11-16 Muhammad Basit Umair , Zeshan Iqbal , Muhammad Bilal , Tarik Adnan Almohamad , Jamel Nebhen , Raja Majid Mehmood

Knowledge Graphs are repositories of information that gather data from a multitude of domains and sources in the form of semantic triples, serving as a source of structured data for various crucial applications in the modern web landscape,…

Computation and Language · Computer Science 2022-10-27 Gabriel Amaral , Odinaldo Rodrigues , Elena Simperl

This article introduces idMotif, a visual analytics framework designed to aid domain experts in the identification of motifs within protein sequences. Motifs, short sequences of amino acids, are critical for understanding the distinct…

Quantitative Methods · Quantitative Biology 2024-02-12 Ji Hwan Park , Vikash Prasad , Sydney Newsom , Fares Najar , Rakhi Rajan

Future Information Retrieval, especially in connection with the internet, will incorporate the content descriptions that are generated with social network extraction technologies and preferably incorporate the probability theory for…

Information Retrieval · Computer Science 2012-07-17 Mahyuddin K. M. Nasution , Shahrul Azman Noah

We illustrate the use of tools (asymptotic theories of standard error quantification using appropriate statistical models, bootstrapping, model comparison techniques) in addition to sensitivity that may be employed to determine the…

Analysis of PDEs · Mathematics 2015-03-17 H. T. Banks , M Doumic , C Kruse , S Prigent , H Rezaei

The proliferation of Internet-of-things (IoT) infrastructures and the widespread adoption of traffic encryption present significant challenges, particularly in environments characterized by dynamic traffic patterns, constrained…

Networking and Internet Architecture · Computer Science 2025-12-25 Hongjuan Li , Hui Kang , Chenbang Liu , Ruolin Wang , Jiahui Li , Geng Sun , Jiacheng Wang , Shuang Liang , Shiwen Mao

Information spread through social networks is ubiquitous. Influence maximiza- tion (IM) algorithms aim to identify individuals who will generate the greatest spread through the social network if provided with information, and have been…

Machine Learning · Statistics 2023-05-16 Octavio Mesner , Elizaveta Levina , Ji Zhu

Diffusion Models (DMs), also referred to as score-based diffusion models, utilize neural networks to specify score functions. Unlike most other probabilistic models, DMs directly model the score functions, which makes them more flexible to…

Machine Learning · Computer Science 2023-04-11 Weijian Luo

We describe and analyze a quantum thermometer based on a multilayered collisional model. We propose a qubit system whose architecture provides significant sensitivity even for short interaction times between the ancillae that compose the…

Quantum Physics · Physics 2025-12-02 Taysa M. Mendonça , Diogo O. Soares-Pinto , Mauro Paternostro

Pimentel et al. (2020) recently analysed probing from an information-theoretic perspective. They argue that probing should be seen as approximating a mutual information. This led to the rather unintuitive conclusion that representations…

Computation and Language · Computer Science 2021-09-10 Tiago Pimentel , Ryan Cotterell

Although deep learning models perform remarkably well across a range of tasks such as language translation and object recognition, it remains unclear what high-level logic, if any, they follow. Understanding this logic may lead to more…

Databases · Computer Science 2019-01-08 Thibault Sellam , Kevin Lin , Ian Yiran Huang , Yiru Chen , Michelle Yang , Carl Vondrick , Eugene Wu

Background: Coevolution within a protein family is often predicted using statistics that measure the degree of covariation between positions in the protein sequence. Mutual Information is a measure of dependence between two random variables…

Populations and Evolution · Quantitative Biology 2013-04-17 Russell J. Dickson , Gregory B. Gloor

Whereas diverse variations of diffusion models exist, extending the linear diffusion into a nonlinear diffusion process is investigated by very few works. The nonlinearity effect has been hardly understood, but intuitively, there would be…

Machine Learning · Computer Science 2022-10-14 Dongjun Kim , Byeonghu Na , Se Jung Kwon , Dongsoo Lee , Wanmo Kang , Il-Chul Moon

Deep Neural Networks (DNNs) have become ubiquitous in medical image processing and analysis. Among them, U-Nets are very popular in various image segmentation tasks. Yet, little is known about how information flows through these networks…

Machine Learning · Computer Science 2021-04-05 Suemin Lee , Ivan V. Bajić

Prompts are the interface for eliciting the capabilities of large language models (LLMs). Understanding their structure and components is critical for analyzing LLM behavior and optimizing performance. However, the field lacks a…

Computation and Language · Computer Science 2026-01-27 Sullam Jeoung , Yueyan Chen , Yi Zhang , Shuai Wang , Haibo Ding , Lin Lee Cheong

An extensive body of research deals with estimating the correlation and the Hurst parameter of Internet traffic traces. The significance of these statistics is due to their fundamental impact on network performance. The coverage of Internet…

Networking and Internet Architecture · Computer Science 2012-08-15 Amr Rizk , Zdravko Bozakov , Markus Fidler