Related papers: Comments on "Remeasuring the Double Helix"
We investigate charge fluctuations in the two-dimensional Hubbard model as a function of doping, interaction strength, next-nearest-neighbor hopping, and temperature within the eight-site dynamical cluster approximation. In the regime of…
Techniques such as detrended fluctuation analysis (DFA) and its extensions have been widely used to determine the nature of scaling in nucleotide sequences. In this brief communication we show that tandem repeats which are ubiquitous in…
By exploring a recent model [Palmeri, J., M. Manghi, and N. Destainville. 2007. Phys. Rev. Lett. 99:088103] where DNA bending elasticity, described by the wormlike chain model, is coupled to base-pair denaturation, we demonstrate that small…
This paper aims at a comprehensive understanding on the novel elastic property of double-stranded DNA (dsDNA) discovered very recently through single-molecule manipulation techniques. A general elastic model for double-stranded biopolymers…
Recently Perez et al [arXiv:1209.2011] wrote on the spectral slope of MHD turbulence claiming that it is consistent with -3/2. This work contains a number of errors, factual inaccuracies and puzzling methods in the interpretation of…
PHENIX has measured many different two-particle azimuthal correlations in several different colliding systems, beam energies, $p_{T}$ windows, etc. The initial striking results from the first full energy Au+Au run have been confirmed, i.e.…
Parts of DNA sequences known as exons and introns play very different role in coding and storage of genetic information. Here we show that their conducting properties are also very different. Taking into account long-range correlations…
Charge transfer in a DNA duplex chain is studied by constructing a system with virtual electrodes connected at the ends of each DNA strand. The systeym is described by the tight-binding model and its transport is analyzed by the transfer…
Charge diffusion through desoxyribonucleic acid (DNA) is a physico-chemical phenomenon that on the one hand is being explored for technological purposes, on the other hand is applied by nature for various informational processes in life.…
The author of article discusses the possible systematic effects in our experiment using reference and picture from allegedly our publication. First of all this publication does not exist. The assumption of author about the probability of…
Although living organisms are affected by many interrelated and unidentified variables, this complexity does not automatically impose a fundamental limitation on statistical inference. Nor need one invoke such complexity as an explanation…
New measurements of short-range and long-range two-particle correlations, azimuthal anisotropy, and event-by-event fluctuations from the STAR experiment for sqrt{s_{NN}}= 130 and 200 GeV Au+Au collisions are summarized. Striking evidence is…
From the per unit length free energy for DNA under tension, we have calculated an effective contour length dependent persistence length for short DNA. This effective persistence length results from the enhanced fluctuations in short DNA. It…
In a recent comment, M. Kosterlitz described how the discrepancy about the lack of broken translational symmetry in two dimensions - doubting the existence of 2D crystals - and the first computer simulations foretelling 2D crystals at least…
We study the melting of a double stranded DNA in the presence of stretching forces, via 3D Monte-Carlo simulations, exactly solvable models and heuristic arguments. The resulting force-temperature phase diagram is dramatically different for…
Correlation length exponent $\nu$ for long linear DNA molecules was determined by direct measurement of the average end-to-end distance as a function of the contour length $s$ by means of atomic force microscopy (AFM). Linear DNA, up to…
DNA is structurally and mechanically altered by the binding of intercalator molecules. Intercalation strongly affects the force-extension behavior of DNA, in particular the overstretching transition. We present a statistical model that…
We propose a formalism for deriving force-elongation and elongation-force relations for flexible chain molecules from analytical expressions for their radial distribution function, which provides insight into the factors controlling the…
We discuss different statistical distances in probability space, with emphasis on the Jensen-Shannon divergence, vis-a-vis {\it metrics} in Hilbert space and their relationship with Fisher's information measure. This study provides further…
Single-molecule stretching experiments on DNA, RNA, and other biological macromolecules opened up the possibility of an impressive progress in many fields of Life and Medical sciences. The reliability of such experiments may be crucially…