Related papers: On Finding Directed Trees with Many Leaves
The routing and wavelength assignment problem arises from the investigation of optimal wavelength allocation in an optical network that employs Wavelength Division Multiplexing (WDM). Consider an optical network that is represented by a…
In the Fully Leafed Induced Subtrees, one is given a graph $G$ and two integers $a$ and $b$ and the question is to find an induced subtree of $G$ with $a$ vertices and at least $b$ leaves. This problem is known to be NP-complete even when…
We define a new balance index for rooted phylogenetic trees based on the symmetry of the evolutive history of every set of 4 leaves. This index makes sense for multifurcating trees and it can be computed in time linear in the number of…
We study a maximization problem for geometric network design. Given a set of $n$ compact neighborhoods in $\mathbb{R}^d$, select a point in each neighborhood, so that the longest spanning tree on these points (as vertices) has maximum…
We ask the question, which oriented trees $T$ must be contained as subgraphs in every finite directed graph of sufficiently large minimum out-degree. We formulate the following simple condition: all vertices in $T$ of in-degree at least $2$…
We consider the parameterized version of the maximum internal spanning tree problem, which, given an $n$-vertex graph and a parameter $k$, asks for a spanning tree with at least $k$ internal vertices. Fomin et al. [J. Comput. System Sci.,…
The notions of bounded expansion and nowhere denseness have been applied very successfully in algorithmic graph theory. We study the corresponding notions of directed bounded expansion and nowhere crownfulness on directed graphs. We show…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…
This paper considers the conjecture by Gr\"unbaum that every planar 3-connected graph has a spanning tree $T$ such that both $T$ and its co-tree have maximum degree at most 3. Here, the co-tree of $T$ is the spanning tree of the dual…
Inferring probabilistic networks from data is a notoriously difficult task. Under various goodness-of-fit measures, finding an optimal network is NP-hard, even if restricted to polytrees of bounded in-degree. Polynomial-time algorithms are…
We consider the k-outconnected directed Steiner tree problem (k-DST). Given a directed edge-weighted graph $G=(V,E,w)$, where $V=\{r\}\cup S \cup T$, and an integer $k$, the goal is to find a minimum cost subgraph of $G$ in which there are…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. Here we explore the practical impact of kernelization (i.e. data reduction) on the NP-hard problem of computing the TBR distance between two unrooted binary…
A rooted arborescence of a directed graph is a spanning tree directed towards a particular vertex. A recent work of Chepuri et al. showed that the arborescences of a covering graph of a directed graph G are closely related to the…
We prove that if a tree $T$ has $n$ vertices and maximum degree at most $\Delta$, then a copy of $T$ can almost surely be found in the random graph $\mathcal{G}(n,\Delta\log^5 n/n)$.
Graphs with bounded treewidth and bounded maximum degree are known to have tree-partitions of bounded width. What can be said if the bounded treewidth assumption is strengthened to bounded pathwidth? We prove that every graph with bounded…
Highly dynamic networks are characterized by frequent changes in the availability of communication links. These networks are often partitioned into several components, which split and merge unpredictably. We present a distributed algorithm…
In this paper, we introduce the Fixed Topology Minimum-Length Tree with Neighborhood Problem, which aims to embed a rooted tree-shaped graph into a $d$-dimensional metric space while minimizing its total length provided that the nodes must…
In the Steiner Path Aggregation Problem, our goal is to aggregate paths in a directed network into a single arborescence without significantly disrupting the paths. In particular, we are given a directed multigraph with colored arcs, a…
Frequent tree mining asks us to enumerate tree patterns that occur frequently in a database of rooted trees. This problem is motivated by tree-structured data in bioinformatics, such as glycans and pseudoknot-free RNA secondary structures.…