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We consider effect of stochastic sources upon self-organization process being initiated with creation of the limit cycle induced by the Hopf bifurcation. General relations obtained are applied to the stochastic Lorenz system to show that…

Statistical Mechanics · Physics 2008-09-30 I A Shuda , S S Borysov , A I Olemskoi

Quantum fluctuations are inherent in open quantum systems and they affect not only the statistical properties of the initial state but also the time evolution of the system. Using a generic minimal model, we show that quantum noise…

Quantum Gases · Physics 2024-12-17 Richelle Jade L. Tuquero , Jayson G. Cosme

Noise has been measured in two types of coductor-insulator mixtures as a function of bias and composition. It was marked by a huge increase in magnitude as the resistance increased only slightly due to Joule heating. The noise (resistance)…

Soft Condensed Matter · Physics 2009-11-10 K. K. Bardhan , C. D. Mukherjee

Noisy fluctuations are ubiquitous in complex systems. They play a crucial or delicate role in the dynamical evolution of gene regulation, signal transduction, biochemical reactions, among other systems. Therefore, it is essential to…

Dynamical Systems · Mathematics 2018-11-05 Jinqiao Duan , Hui Wang

A common method for analyzing the effects of molecular noise in chemical reaction networks is to approximate the underlying chemical master equation by a Fokker-Planck equation, and to study the statistics of the associated chemical…

Probability · Mathematics 2018-11-05 Paul C. Bressloff , James N. MacLaurin

The Brusselator model are used for the study of the intrinsic fluctuations of chemical reactions with different approaches. The equilibrium states of systems are assumed to be spirally stable in mean-field description, and two statistical…

Chemical Physics · Physics 2019-02-22 Hong-Yuan Xu , Yu-Pin Luo , Ming-Chang Huang

It is well known that the kinetics of an intracellular biochemical network is stochastic. This is due to intrinsic noise arising from the random timing of biochemical reactions in the network as well as due to extrinsic noise stemming from…

Subcellular Processes · Quantitative Biology 2019-06-05 Emma M. Keizer , Bjorn Bastian , Robert W. Smith , Ramon Grima , Christian Fleck

We develop a formalism to describe the discrete-time dynamics of systems containing an arbitrary number of interacting species. The individual-based model, which forms our starting point, is described by a Markov chain, which in the limit…

Statistical Mechanics · Physics 2014-10-06 César Parra-Rojas , Joseph D. Challenger , Duccio Fanelli , Alan J. McKane

In spatially distributed cellular systems, it is often convenient to represent complicated auxiliary pathways and spatial transport by time-delayed reaction rates. Furthermore, many of the reactants appear in low numbers necessitating a…

Quantitative Methods · Quantitative Biology 2015-05-14 Matthew Scott

Unidirectionally coupled dynamical system is studied by focusing on the input (or boundary) dependence. Due to convective instability, noise at an up-flow is spatially amplified to form an oscillation. The response, given by the down-flow…

chao-dyn · Physics 2009-10-31 Koichi Fujimoto , Kunihiko Kaneko

Demographic noise has profound effects on evolutionary and population dynamics, as well as on chemical reaction systems and models of epidemiology. Such noise is intrinsic and due to the discreteness of the dynamics in finite populations.…

Physics and Society · Physics 2015-05-14 Tobias Galla

Theoretical and experimental studies have shown that the fluctuations of in vivo systems break the fluctuation-dissipation theorem. One can thus ask what information is contained in the correlation functions of protein concentrations and…

Chemical Physics · Physics 2016-08-24 Hélène Berthoumieux

The influence of noise on the generalized synchronization regime in the chaotic systems with dissipative coupling is considered. If attractors of the drive and response systems have an infinitely large basin of attraction, generalized…

Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

Molecular Networks · Quantitative Biology 2009-11-13 Yurie Okabe , Masaki Sasai

Intracellular transmission of information via chemical and transcriptional networks is thwarted by a physical limitation: the finite copy number of the constituent chemical species introduces unavoidable intrinsic noise. Here we provide a…

Molecular Networks · Quantitative Biology 2010-08-27 Andrew Mugler , Aleksandra M. Walczak , Chris H. Wiggins

Synchronization of coupled oscillators is a paradigm for complexity in many areas of science and engineering. Any realistic network model should include noise effects. We present a description in terms of phase and amplitude deviation for…

Adaptation and Self-Organizing Systems · Physics 2019-05-09 Michele Bonnin , Fernando Corinto , Valentina Lanza

The presence of noise in non linear dynamical systems can play a constructive role, increasing the degree of order and coherence or evoking improvements in the performance of the system. An example of this positive influence in a biological…

Dynamical Systems · Mathematics 2016-09-07 M. -P. Zorzano , L. Vazquez

We study fluctuations in a vertically oscillated layer of grains below the critical acceleration for the onset of ordered standing waves. As onset is approached, transient disordered waves with a characteristic length scale emerge and…

Condensed Matter · Physics 2009-11-10 Daniel I. Goldman , J. B. Swift , Harry L. Swinney

Effect of noise in inducing order on various chaotically evolving systems is reviewed, with special emphasis on systems consisting of coupled chaotic elements. In many situations it is observed that the uncoupled elements when driven by…

chao-dyn · Physics 2015-06-24 Manojit Roy , R. E. Amritkar

Spontaneous oscillations induced by time delays are observed in many real-world systems. Phase reduction theory for limit-cycle oscillators described by delay-differential equations (DDEs) has been developed to analyze their synchronization…

Adaptation and Self-Organizing Systems · Physics 2020-07-23 Kiyoshi Kotani , Yutaro Ogawa , Sho Shirasaka , Akihiko Akao , Yasuhiko Jimbo , Hiroya Nakao