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In complex networks it is common to model a network or generate a surrogate network based on the conservation of the network's degree distribution. We provide an alternative network model based on the conservation of connection density…

Physics and Society · Physics 2015-05-27 R. J. Mondragon , S. Zhou

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Modeling and topological analysis of networks in biological and other complex systems, must venture beyond the limited consideration of very few network metrics like degree, betweenness or assortativity. A proper identification of…

Quantitative Methods · Quantitative Biology 2012-09-25 Soumen Roy

We study a new class of networks, generated by sequences of letters taken from a finite alphabet consisting of $m$ letters (corresponding to $m$ types of nodes) and a fixed set of connectivity rules. Recently, it was shown how a binary…

Disordered Systems and Neural Networks · Physics 2009-02-17 Jie Sun , Takashi Nishikawa , Daniel ben-Avraham

Discovering and characterizing the large-scale topological features in empirical networks are crucial steps in understanding how complex systems function. However, most existing methods used to obtain the modular structure of networks…

Data Analysis, Statistics and Probability · Physics 2014-03-26 Tiago P. Peixoto

Network analysis has emerged as a key technique in communication studies, economics, geography, history and sociology, among others. A fundamental issue is how to identify key nodes, for which purpose a number of centrality measures have…

Social and Information Networks · Computer Science 2018-01-08 László Csató

Uncovering latent community structure in complex networks is a field that has received an enormous amount of attention. Unfortunately, whilst potentially very powerful, unsupervised methods for uncovering labels based on topology alone has…

Social and Information Networks · Computer Science 2018-06-29 James P Gilbert , Jamie Twycross

This paper addresses the question of whether it is possible to generate networks with a given global structure (defined by selected blockmodels, i.e., cohesive, core-periphery, hierarchical and transitivity), considering only different…

Statistics Theory · Mathematics 2018-07-04 Marjan Cugmas , Anuška Ferligoj , Aleš Žiberna

Numerous works have been proposed to generate random graphs preserving the same properties as real-life large scale networks. However, many real networks are better represented by hypergraphs. Few models for generating random hypergraphs…

Social and Information Networks · Computer Science 2021-03-03 Frédéric Giroire , Nicolas Nisse , Thibaud Trolliet , Małgorzata Sulkowska

As a fundamental problem in many different fields, link prediction aims to estimate the likelihood of an existing link between two nodes based on the observed information. Since this problem is related to many applications ranging from…

Physics and Society · Physics 2014-10-01 Hao Liao , An Zeng , Yi-Cheng Zhang

It is commonly believed that real networks are scale-free and fraction of nodes $P(k)$ with degree $k$ satisfies the power law $P(k) \propto k^{-\gamma} \text{ for } k > k_{min} > 0$. Preferential attachment is the mechanism that has been…

Data Structures and Algorithms · Computer Science 2023-06-22 Raheel Anwar , Muhammad Irfan Yousuf , Muhammad Abid

Thresholding--the pruning of nodes or edges based on their properties or weights--is an essential preprocessing tool for extracting interpretable structure from complex network data, yet existing methods face several key limitations.…

Social and Information Networks · Computer Science 2025-10-07 Adam Schroeder , Russell Funk , Jingyi Guan , Taylor Okonek , Lori Ziegelmeier

(a) We propose a ``static'' construction procedure for random networks with given correlations of the degrees of the nearest-neighbor vertices. This is an equilibrium graph, maximally random under the constraint that its degree-degree…

Statistical Mechanics · Physics 2007-05-23 S. N. Dorogovtsev , J. F. F. Mendes , A. N. Samukhin

We investigate choice-driven network growth. In this model, nodes are added one by one according to the following procedure: for each addition event a set of target nodes is selected, each according to linear preferential attachment, and a…

Statistical Mechanics · Physics 2014-07-25 P. L. Krapivsky , S. Redner

We study the structure of loops in networks using the notion of modulus of loop families. We introduce a new measure of network clustering by quantifying the richness of families of (simple) loops. Modulus tries to minimize the expected…

Social and Information Networks · Computer Science 2017-01-25 Heman Shakeri , Pietro Poggi-Corradini , Nathan Albin , Caterina Scoglio

The paper tackles the problem of clustering multiple networks, directed or not, that do not share the same set of vertices, into groups of networks with similar topology. A statistical model-based approach based on a finite mixture of…

Statistics Theory · Mathematics 2023-11-07 Tabea Rebafka

A graph generative model defines a distribution over graphs. One type of generative model is constructed by autoregressive neural networks, which sequentially add nodes and edges to generate a graph. However, the likelihood of a graph under…

Machine Learning · Statistics 2021-06-15 Xiaohui Chen , Xu Han , Jiajing Hu , Francisco J. R. Ruiz , Liping Liu

This paper describes a novel approach to modeling homphily, i.e. the tendency of nodes that share (or differ in) certain attributes to be linked; we consider dynamic networks in which nodes can be added over time but not removed. Our…

Genomics · Quantitative Biology 2022-01-13 V. DeGruttola , M. Nakazawa , J. Liu , X. Tu , S. Little , S. Mehta

This paper proposes a new class of assortativity measures for weighted and directed networks. We extend the classical Newman's degree-degree assortativity by considering nodes' attributes different from the degree. Moreover, we propose…

Physics and Society · Physics 2024-03-05 Alberto Arcagni , Roy Cerqueti , Rosanna Grassi

Scale-free networks are characterized by a degree distribution with power-law behavior and have been shown to arise in many areas, ranging from the World Wide Web to transportation or social networks. Degree distributions of observed…

Data Analysis, Statistics and Probability · Physics 2009-11-11 C. C. Leary , M. Schwehm , M. Eichner , H. P. Duerr