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We introduce methods for large scale Brownian Dynamics (BD) simulation of many rigid particles of arbitrary shape suspended in a fluctuating fluid. Our method adds Brownian motion to the rigid multiblob method at a cost comparable to the…

Soft Condensed Matter · Physics 2018-01-17 B. Sprinkle , F. Balboa Usabiaga , N. A. Patankar , A. Donev

We study the elastic response of a worm-like polymer chain with reversible kink-like structural defects. This is a generic model for (a) the double-stranded DNA with sharp bends induced by binding of certain proteins, and (b) effects of…

Soft Condensed Matter · Physics 2009-11-10 Yuri O. Popov , Alexei V. Tkachenko

We study a simple two-dimensional model for motion of an elastic filament subject to internally generated stresses and show that wave-like propagating shapes which can propel the filament can be induced by a self-organized mechanism via a…

Soft Condensed Matter · Physics 2019-08-17 S. Camalet , F. Julicher , J. Prost

We investigated three models of Brownian motors which convert rotational diffusion into directed translational motion by switching on and off a potential. In the first model a spatially asymmetric potential generates directed translational…

Statistical Mechanics · Physics 2009-11-11 Brian Geislinger , Ryoichi Kawai

We study a model of cell motility where the condition of optimal trade-off between performance and metabolic cost can be made precise. In this model a steadily crawling fragment is represented by a layer of active gel placed on a frictional…

Biological Physics · Physics 2015-06-18 P. Recho , J. -F. Joanny , L. Truskinovsky

Dyson's Brownian motion model with the parameter $\beta=2$, which we simply call the Dyson model in the present paper, is realized as an $h$-transform of the absorbing Brownian motion in a Weyl chamber of type A. Depending on initial…

Probability · Mathematics 2013-01-16 Makoto Katori , Hideki Tanemura

The pure traction problem of elasticity appears frequently in engineering applications, and its complexity stems from the fact that its solution is unique only up to (infinitesimal) rigid body motions. When finite elements are employed to…

Numerical Analysis · Mathematics 2026-02-05 Ahsan Kaleem , Cristian Gebhardt , Ignacio Romero

We are concerned with multidimensional nonlinear stochastic transport equation driven by Brownian motions. For irregular fluxes, by using stochastic BGK approximations and commutator estimates, we gain the existence and uniqueness of…

Probability · Mathematics 2018-01-16 Jinlong Wei , Rongrong Tian , Guangying Lv

We study reflecting Brownian motion with drift constrained to a wedge in the plane. Our first set of results provide necessary and sufficient conditions for existence and uniqueness of a solution to the corresponding submartingale problem…

Probability · Mathematics 2022-04-26 Peter Lakner , Ziran Liu , Josh Reed

Inspired by recent experiments on chromosomal dynamics, we introduce an exactly solvable model for the interaction between a flexible polymer and a set of motor-like enzymes. The enzymes can bind and unbind to specific sites of the polymer…

Soft Condensed Matter · Physics 2019-04-03 Stefanie Put , Takahiro Sakaue , Carlo Vanderzande

Numerous physical models have been proposed to explain how cell motility emerges from internal activity, mostly focused on how crawling motion arises from internal processes. Here we offer a classification of self-propulsion mechanisms…

Soft Condensed Matter · Physics 2020-03-05 Aurore Loisy , Jens Eggers , Tanniemola B. Liverpool

We present a simple chemical strategy for the formation of a self-propelling cluster via the process of capture and assembly of passive colloids on the surface of a chemically active colloid. The two species of colloids that are isotropic…

Biological Physics · Physics 2019-10-02 Prabha Chuphal , Ishwar Venugopal , Snigdha Thakur

We prove that stochastic replicator dynamics can be interpreted as intrinsic Brownian motion on the simplex equipped the Aitchison geometry. As an immediate consequence we derive three approximation results in the spirit of Wong-Zakai…

Probability · Mathematics 2020-08-13 Tobias Lehmann

Micron-sized self-propelled (active) particles can be considered as model systems for characterizing more complex biological organisms like swimming bacteria or motile cells. We produce asymmetric microswimmers by soft lithography and study…

The transport of self-propelled particles such as bacteria and phoretic swimmers through crowded heterogeneous environments is relevant to many natural and engineering processes, from biofilm formation and contamination processes to…

Fluid Dynamics · Physics 2019-04-10 Roberto Alonso-Matilla , Brato Chakrabarti , David Saintillan

Brownian motors and Feymann ratchets have been intensively studied in the past decades due to their significance to the foundation of statistical physics. In this work we propose a new type of Brownian motor, i.e., a self-driven motor that…

Statistical Mechanics · Physics 2020-01-29 Hanqing Zhao

While the dynamics of polymer chains in equilibrium media is well understood by now, the polymer dynamics in active non-equilibrium environments can be very different. Here we study the dynamics of polymers in a viscous medium containing…

Soft Condensed Matter · Physics 2017-06-23 Jaeoh Shin , Andrey G. Cherstvy , Won Kyu Kim , Vasily Zaburdaev

Typically the motion of self-propelled active particles is described in a quiescent environment establishing an inertial frame of reference. Here we assume that friction, self-propulsion and uctuations occur relative to a non-inertial frame…

Soft Condensed Matter · Physics 2019-06-26 Hartmut Löwen

Using Brownian dynamics (BD) simulations we investigate the self-organization of a monolayer of chiral active particles with dipolar interactions. Each particle is driven by both, translational and rotational self-propulsion, and carries a…

Soft Condensed Matter · Physics 2021-07-13 Guo-Jun Liao , Sabine H. L. Klapp

We perform detailed computational and experimental measurements of the driven dynamics of a dense, uniform suspension of sedimented microrollers driven by a magnetic field rotating around an axis parallel to the floor. We develop a…

Soft Condensed Matter · Physics 2020-07-03 Brennan Sprinkle , Ernest B. van der Wee , Yixiang Luo , Michelle Driscoll , Aleksandar Donev