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Bacterial chemotactic sensing converts noisy chemical signals into running and tumbling. We analyze the static sensing limits of mixed Tar/Tsr chemoreceptor clusters in individual Escherichia coli cells using a heterogeneous…

Quantitative Methods · Quantitative Biology 2026-02-24 Ziyi Cui , Sarah Marzen

The dynamics of self-locomotion of active particles in aligned or liquid crystalline fluids strongly deviates from that in simple isotropic media. We explore the long-time dynamics of a swimmer moving in a three-dimensional smectic liquid…

Soft Condensed Matter · Physics 2018-08-01 Claudia Ferreiro-Córdova , John Toner , Hartmut Löwen , Henricus H. Wensink

Contrasting the well explored problem on how to steer a macroscopic agent like an airplane or a moon lander to optimally reach a target, "optimal microswimming", i.e. the quest for the optimal navigation strategy for microswimmers, remains…

Fluid Dynamics · Physics 2022-05-10 Abdallah Daddi-Moussa-Ider , Hartmut Löwen , Benno Liebchen

We explore a mechanism of the anomalous rheology of active suspensions by hydrodynamic simulations using model pusher swimmers. Our simulations demonstrate that hydrodynamic interactions under shear flow systematically orient swimmers along…

Soft Condensed Matter · Physics 2023-12-19 Haruki Hayano , Akira Furukawa

Recent numerical simulations of hard helical particle systems unveiled the existence of a novel chiral nematic phase, termed screw-like, characterised by the helical organization of the particle C$_2$ symmetry axes round the nematic…

Soft Condensed Matter · Physics 2018-01-17 Giorgio Cinacchi , Alberta Ferrarini , Achille Giacometti , Hima Bindu Kolli

In simple fluids, such as water, invariance under parity and time-reversal symmetry imposes that the rotation of constituent 'atoms' are determined by the flow and that viscous stresses damp motion. Activation of the rotational degrees of…

Chemical signaling is one of the ubiquitous mechanisms by which inter-cellular communication takes place at the microscopic level, particularly via chemotaxis. Such multi-cellular systems are popularly studied using continuum, mean-field…

Cell Behavior · Quantitative Biology 2009-11-11 Ramon Grima

Many biological microswimmers are capable of chemotaxis, i.e., they can sense an ambient chemical gradient and adjust their mechanism of motility to move towards or away from the source of the gradient. Synthetic active colloids endowed…

Soft Condensed Matter · Physics 2024-06-18 Viviana Mancuso , Mihail N. Popescu , William E. Uspal

We show that spontaneous density segregation in dense systems of aligning circle swimmers is a condensation phenomenon at odds with the phase separation scenarios usually observed in two-dimensional active matter. The condensates, which…

Soft Condensed Matter · Physics 2024-12-20 Yujia Wang , Bruno Ventéjou , Hugues Chaté , Xia-qing Shi

A self-consistent radiation-hydrodynamics model of an accretion channel of subcritical X-ray pulsars is constructed. The influence of the presence of resonance in the scattering cross-section on the accretion process and radiation transfer…

High Energy Astrophysical Phenomena · Physics 2024-03-01 I. D. Markozov , A. D. Kaminker , A. Y. Potekhin

A minimal design for a molecular swimmer is proposed that is a based on a mechanochemical propulsion mechanism. Conformational changes are induced by electrostatic actuation when specific parts of the molecule temporarily acquire net…

Biological Physics · Physics 2015-05-19 Ramin Golestanian

The response of microbes to external signals is mediated by biochemical networks with intrinsic time scales. These time scales give rise to a memory that impacts cellular behaviour. Here we study theoretically the role of cellular memory in…

Biological Physics · Physics 2020-02-14 Adam Gosztolai , Mauricio Barahona

We describe a method for programming the autonomous navigation of active colloidal particles in response to spatial gradients in a scalar stimulus. Functional behaviors such as positive or negative chemotaxis are encoded in the particle…

Soft Condensed Matter · Physics 2019-12-11 Yong Dou , Kyle J. M. Bishop

Oscillatory flows are commonly experienced by swimming microorganisms in the environment, industrial applications and rheological investigations. We experimentally characterise the response of the alga {\it Dunaliella salina} to oscillatory…

Biological Physics · Physics 2016-09-28 Alexander Hope , Ottavio A. Croze , Wilson C. K. Poon , Martin A. Bees , Mark D. Haw

The nonlinear flow behaviour of a viscoelastic gel formed due to entangled, cylindrical micelles in aqueous solutions of the surfactant CTAT has been studied. On subjecting the system to a step shear rate lying above a certain value, the…

Soft Condensed Matter · Physics 2009-10-31 Ranjini Bandyopadhyay , Geetha Basappa , A. K. Sood

Compared to isotropic liquids, orientational order of nematic liquid crystals makes their rheological properties more involved, and thus requires fine control of the flow parameters to govern the orientational patterns. In microfluidic…

Soft Condensed Matter · Physics 2020-01-03 Simon Čopar , Žiga Kos , Tadej Emeršič , Uroš Tkalec

The creation of synthetic systems that emulate the defining properties of living matter, such as motility, gradient-sensing, signalling and replication, is a grand challenge of biomimetics. Such imitations of life crucially contain active…

Soft Condensed Matter · Physics 2015-06-17 Suropriya Saha , Ramin Golestanian , Sriram Ramaswamy

Phoretic swimmers are a class of artificial active particles that has received significant attention in recent years. By making use of self-generated gradients (e.g. in temperature, electric potential or some chemical product) phoretic…

Soft Condensed Matter · Physics 2018-10-23 Maria Tătulea-Codrean , Eric Lauga

Bacteria such as Escherichia coli (E. coli) exhibit biased motion if kept in a spatially non-uniform chemical environment. Here, we bring out unique time-dependent characteristics of bacterial chemotaxis, in response to a diffusing spatial…

Biological Physics · Physics 2018-12-05 Sibendu Samanta , Ritwik Layek , Shantimoy Kar , Sudipta Mukhopadhyay , Suman Chakraborty

While it is commonly observed that the shape dynamics of mammalian cells can undergo large random fluctuations, theoretical models aiming at capturing cell mechanics often focus on the deterministic part of the motion. In this paper, we…

Biological Physics · Physics 2021-04-07 Vikram Deshpande , Antonio DeSimone , Robert McMeeking , Pierre Recho