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Related papers: Bethe approximation for a DNA-like self-avoiding w…

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A square-lattice model for the formation of secondary structures in proteins, the hydrogen-bonding model, extended to include the effects of solvent quality, is examined in the framework of the Bethe approximation.

Statistical Mechanics · Physics 2009-11-13 D. P. Foster , M. Aniambossou

We present a Bethe approximation to study lattice models of linear polymers. The approach is variational in nature and based on the cluster variation method (CVM). We focus on a model with $(i)$ a nearest neighbor attractive energy…

Statistical Mechanics · Physics 2009-10-31 Stefano Lise , Amos Maritan , Alessandro Pelizzola

A new supersymmetric model for electrons with generalized hopping terms and Hubbard interaction on a one-dimensional lattice is solved by means of the Bethe Ansatz. We investigate the phase diagram of this model by studying the ground state…

Condensed Matter · Physics 2009-10-28 Gerald Bedürftig , Holger Frahm

We report studies of the equilibrium and the dynamics of a general set of lattice models which capture the essence of the force-induced or mechanical DNA unzipping transition. Besides yielding the whole equilibrium phase diagram in the…

Soft Condensed Matter · Physics 2009-11-07 D. Marenduzzo , S. M. Bhattacharjee , A. Maritan , E. Orlandini , F. Seno

A two-dimensional square-lattice model for the formation of secondary structures in proteins, the hydrogen-bonding model, is extended to include the effects of solvent quality. This is achieved by allowing configuration-dependent…

Statistical Mechanics · Physics 2009-11-13 D P Foster , C Pinettes

The Bethe free energy approximation provides an effective way for relaxing NP-hard problems of probabilistic inference. However, its accuracy depends on the model parameters and particularly degrades if a phase transition in the model…

Machine Learning · Statistics 2024-10-24 Harald Leisenberger , Christian Knoll , Franz Pernkopf

Phase diagram of the ground states of DNA in a bad solvent is studied for a semi-flexible polymer model with a generalized local elastic bending potential characterized by a nonlinearity parameter $x$ and effective self-attraction promoting…

Biomolecules · Quantitative Biology 2016-01-28 Trinh X. Hoang , Hoa Lan Trinh , Achille Giacometti , Rudolf Podgornik , Jayanth R. Banavar , Amos Maritan

This article gives a pedagogic derivation of the Bethe Ansatz solution for 1D interacting anyons. This includes a demonstration of the subtle role of the anyonic phases in the Bethe Ansatz arising from the anyonic commutation relations. The…

Statistical Mechanics · Physics 2007-05-23 M. T. Batchelor , X. -W. Guan , J. -S. He

The basics of the thermodynamic Bethe ansatz equation are given. The simplest case is repulsive delta function bosons, the thermodynamic equation contains only one unknown function. We also treat the XXX model with spin 1/2 and the XXZ…

Statistical Mechanics · Physics 2009-10-30 Minoru Takahashi

We consider a lattice polymer model (random walk), in which the walk is allowed to visit lattice bonds at most twice. Such a model might have some relevance to describe statistical properties of RNA molecules. In order to mimic base…

Soft Condensed Matter · Physics 2009-11-11 M. Pretti

The asymmetric exclusion process on a ring in one-dimension is considered with a single defect particle. The steady state has previously been solved by a matrix product method. Here we use the Bethe ansatz to solve exactly for the long time…

Statistical Mechanics · Physics 2009-10-31 B. Derrida , M. R. Evans

We propose an effective Bethe ansatz for solving quantum many-body systems near an integrable point. Our approach retains the functional form of the Bethe wave function while renormalizing the Bethe roots to account for…

Statistical Mechanics · Physics 2026-04-07 Wenlong Zhao , Yunfeng Jiang , Rui-Dong Zhu

Slowly walking technicolor models provide a mechanism for electroweak symmetry breaking whose nonperturbative lattice investigation is rather challenging. Here we demonstrate walking near a conformal fixed point considering the 2-d lattice…

High Energy Physics - Lattice · Physics 2015-06-04 Philippe de Forcrand , Michele Pepe , Uwe-Jens Wiese

In this paper we develop a Bethe approximation, based on the cluster variation method, which is apt to study lattice models of branched polymers. We show that the method is extremely accurate in cases where exact results are known as, for…

Statistical Mechanics · Physics 2007-05-23 Paolo De Los Rios , Stefano Lise , Alessandro Pelizzola

A theory for thermomechanical behavior of homogeneous DNA at thermal equilibrium predicts critical temperatures for denaturation under torque and stretch, phase diagrams for stable B--DNA, supercoiling, optimally stable torque, and the…

Soft Condensed Matter · Physics 2015-05-27 Cristiano Nisoli , A. R. Bishop

When double stranded DNA is turned in experiments it undergoes a transition. We use an interacting self-avoiding walk on a three-dimensional fcc lattice weighted by writhe to relate to these experiments and treat this problem via…

Statistical Mechanics · Physics 2016-10-28 Eduardo Dagrosa , Aleksander L Owczarek , Thomas Prellberg

We solve a model of self-avoiding walks with up to two monomers per site on the Bethe lattice. This model, inspired on the Domb-Joyce model, was recently proposed to describe the collapse transition observed in interacting polymers [J.…

Statistical Mechanics · Physics 2009-11-11 Pablo Serra , Juergen F. Stilck

When DNA molecules are heated they denature. This occurs locally so that loops of molten single DNA strands form, connected by intact double-stranded DNA pieces. The properties of this "melting" transition have been intensively…

Biological Physics · Physics 2015-06-29 E. Werner , M. Reiter-Schad , T. Ambjörnsson , B. Mehlig

Advanced chain-growth computer simulation methodologies have been employed for a systematic statistical analysis of the critical behavior of a polymer adsorbing at a substrate. We use finitesize scaling techniques to investigate the…

Soft Condensed Matter · Physics 2017-05-09 J. A. Plascak , Paulo H. L. Martins , Michael Bachmann

The eigenfunctions and eigenvalues of the master-equation for zero range process on a ring are found exactly via the Bethe ansatz. The rates of particle exit from a site providing the Bethe ansatz applicability are shown to be expressed in…

Statistical Mechanics · Physics 2007-05-23 A. M. Povolotsky
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