Related papers: Rotation Distance is Fixed-Parameter Tractable
With the growing focus on semantic searches and interpretations, an increasing number of standardized vocabularies and ontologies are being designed and used to describe data. We investigate the querying of objects described by a…
Graham and Pollak showed that the determinant of the distance matrix of a tree $T$ depends only on the number of vertices of $T$. Graphical distance, a function of pairs of vertices, can be generalized to ``Steiner distance'' of sets $S$ of…
The purpose of this paper is to extend the definition of Frechet distance which measures the distance between two curves to a distance (Frechet-Like distance) which measures the similarity between two rooted trees. The definition of…
A rotor configuration on a graph contains in every vertex an infinite ordered sequence of rotors, each is pointing to a neighbor of the vertex. After sampling a configuration according to some probability measure, a rotor walk is a…
A central theme in phylogenetics is the reconstruction and analysis of evolutionary trees from a given set of data. To determine the optimal search methods for reconstructing trees, it is crucial to understand the size and structure of the…
Net-trees are a general purpose data structure for metric data that have been used to solve a wide range of algorithmic problems. We give a simple randomized algorithm to construct net-trees on doubling metrics using $O(n\log n)$ time in…
We argue that parameterized complexity is a useful tool with which to study global constraints. In particular, we show that many global constraints which are intractable to propagate completely have natural parameters which make them…
In a recent article [5], the authors claim that the distance between the b-chromatic index of a tree and a known upper bound is at most 1. At the same time, in [7] the authors claim to be able to construct a tree where this difference is…
Cartesian tree pattern matching consists of finding all the factors of a text that have the same Cartesian tree than a given pattern. There already exist theoretical and practical solutions for the exact case. In this paper, we propose the…
The number of trees T in the random forest (RF) algorithm for supervised learning has to be set by the user. It is controversial whether T should simply be set to the largest computationally manageable value or whether a smaller T may in…
Random forests construct each tree with a different, randomised representation of the feature space. Their uniform voting cannot correct errors in regions where trees with incorrect representations probabilistically outnumber correct ones,…
We give a general construction of triangulations starting from a walk in the quarter plane with small steps, which is a discrete version of the mating of trees. We use a special instance of this construction to give a bijection between maps…
We study the simple random walk on trees and give estimates on the mixing and relaxation time. Relying on a recent characterization by Basu, Hermon and Peres, we give geometric criteria, which are easy to verify and allow to determine…
We consider a random tree and introduce a metric in the space of trees to define the ``mean tree'' as the tree minimizing the average distance to the random tree. When the resulting metric space is compact we have laws of large numbers and…
A metric tree ($M$, $d$), also known as $\mathbb{R}$-trees or $T$-theory, is a metric space such that between any two points there is an unique arc and that arc is isometric to an interval in $\mathbb{R}$. In this paper after presenting…
A rearrangement operation makes a small graph-theoretical change to a phylogenetic network to transform it into another one. For unrooted phylogenetic trees and networks, popular rearrangement operations are tree bisection and reconnection…
Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…
We establish maximal trees and graphs for the difference of average distance and proximity proving thus the corresponding conjecture posed in [4]. We also establish maximal trees for the difference of average eccentricity and remoteness and…
We consider the following basic problem in phylogenetic tree construction. Let $\mathcal{P} = \{T_1, \ldots, T_k\}$ be a collection of rooted phylogenetic trees over various subsets of a set of species. The tree compatibility problem asks…
In short, our experiments suggest that yes, on average, rotation forest is better than the most common alternatives when all the attributes are real-valued. Rotation forest is a tree based ensemble that performs transforms on subsets of…