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Random walks are ubiquitous in the sciences, and they are interesting from both theoretical and practical perspectives. They are one of the most fundamental types of stochastic processes; can be used to model numerous phenomena, including…

Physics and Society · Physics 2020-04-13 Naoki Masuda , Mason A. Porter , Renaud Lambiotte

Directed graphs are widely used in modelling of nonsymmetric relations in various sciences and engineering disciplines. We discuss invariants of strongly connected directed graphs - minimal number of vertices or edges necessary to remove to…

Discrete Mathematics · Computer Science 2016-10-21 Peteris Daugulis

A key requirement for graph neural networks is that they must process a graph in a way that does not depend on how the graph is described. Traditionally this has been taken to mean that a graph network must be equivariant to node…

Machine Learning · Computer Science 2020-11-24 Pim de Haan , Taco Cohen , Max Welling

The use of directed acyclic graphs (DAGs) to represent conditional independence relations among random variables has proved fruitful in a variety of ways. Recursive structural equation models are one kind of DAG model. However,…

Artificial Intelligence · Computer Science 2013-02-21 Peter L. Spirtes

A sequence $D=(d_1,d_2,\ldots,d_n)$ of non-negative integers is called a graphic sequence if there is a simple graph with vertices $v_1,v_2,\ldots,v_n$ such that the degree of $v_i$ is $d_i$ for $1\leq i\leq n$. Given a graph theoretical…

Combinatorics · Mathematics 2025-04-23 Peiyi Duan , Yingzhi Tian

Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…

Populations and Evolution · Quantitative Biology 2018-09-05 Joan Carles Pons , Charles Semple , Mike Steel

This article surveys the variety of ways in which a directed acyclic graph (DAG) can be used to represent a problem of probabilistic causality. For each of these we describe the relevant formal or informal semantics governing that…

Statistics Theory · Mathematics 2024-02-16 Philip Dawid

Social networks are organized into communities with dense internal connections, giving rise to high values of the clustering coefficient. In addition, these networks have been observed to be assortative, i.e. highly connected vertices tend…

Physics and Society · Physics 2016-09-08 R. Toivonen , J. -P. Onnela , J. Saramäki , J. Hyvönen , K. Kaski

We introduce a convolutional neural network that operates directly on graphs. These networks allow end-to-end learning of prediction pipelines whose inputs are graphs of arbitrary size and shape. The architecture we present generalizes…

Paths are important structural elements in complex networks because they are finite (unlike walks), related to effective node coverage (minimum spanning trees), and can be understood as being dual to star connectivity. This article…

Physics and Society · Physics 2007-12-05 Luciano da Fontoura Costa

In this paper, we introduce directed networks called `divergence network' in order to perform graphical calculation of divergence functions. By using the divergence networks, we can easily understand the geometric meaning of calculation…

Machine Learning · Computer Science 2018-11-02 Tomohiro Nishiyama

We study a class of directed random graphs. In these graphs, the interval [0,x] is the vertex set, and from each y\in [0,x], directed links are drawn to points in the interval (y,x] which are chosen uniformly with density one. We analyze…

Probability · Mathematics 2012-10-31 Yoshiaki Itoh , P. L. Krapivsky

Dynamical processes on complex networks such as information propagation, innovation diffusion, cascading failures or epidemic spreading are highly affected by their underlying topologies as characterized by, for instance, degree-degree…

Data Analysis, Statistics and Probability · Physics 2013-03-05 Mathias Raschke , Markus Schläpfer , Konstantinos Trantopoulos

Rooted phylogenetic networks are rooted acyclic digraphs. They are used to model complex evolution where hybridization, recombination and other reticulation events play important roles. A rigorous definition of network compression is…

Data Structures and Algorithms · Computer Science 2019-03-05 Andreas D. M. Gunawan , Hongwei Yan , Louxin Zhang

Without any assumptions about data generation, multiple causal models may explain our observations equally well. To avoid selecting a single arbitrary model that could result in unsafe decisions if it does not match reality, it is therefore…

Machine Learning · Computer Science 2025-01-13 Tristan Deleu

We consider spectral methods that uncover hidden structures in directed networks. We establish and exploit connections between node reordering via (a) minimizing an objective function and (b) maximizing the likelihood of a random graph…

Social and Information Networks · Computer Science 2021-10-12 Xue Gong , Desmond John Higham , Konstantinos Zygalakis

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

Social and Information Networks · Computer Science 2017-07-24 Sushrut Ghonge , Dervis Can Vural

In this paper, we tackle structure learning of Directed Acyclic Graphs (DAGs), with the idea of exploiting available prior knowledge of the domain at hand to guide the search of the best structure. In particular, we assume to know the…

Methodology · Statistics 2024-01-19 Thi Kim Hue Nguyen , Monica Chiogna , Davide Risso , Erika Banzato

Directed acyclic graphs have been used fruitfully to represent causal strucures (Pearl 1988). However, in the social sciences and elsewhere models are often used which correspond both causally and statistically to directed graphs with…

Artificial Intelligence · Computer Science 2020-10-24 Thomas S. Richardson

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg