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Related papers: Distributed Agreement in Tile Self-Assembly

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We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

Computational Complexity · Computer Science 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

Large-scale decentralized systems of autonomous agents interacting via asynchronous communication often experience the following self-healing dilemma: fault detection inherits network uncertainties making a remote faulty process…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-25 Jovan Nikolic , Nursultan Jubatyrov , Evangelos Pournaras

The emerging field of passive macro-scale tile-based self-assembly (TBSA) shows promise in enabling effective manufacturing processes by harnessing TBSA's intrinsic parallelism. However, current TBSA methodologies still do not fulfill their…

Robotics · Computer Science 2022-06-09 M. Jílek , K. Stránská , M. Somr , M. Kulich , J. Zeman , L. Přeučil

In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of input shapes. Namely, we work within the Signal-passing Tile…

Emerging Technologies · Computer Science 2022-04-05 Andrew Alseth , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

In this paper we present a model containing modifications to the Signal-passing Tile Assembly Model (STAM), a tile-based self-assembly model whose tiles are capable of activating and deactivating glues based on the binding of other glues.…

Emerging Technologies · Computer Science 2022-03-30 Andrew Alseth , Daniel Hader , Matthew J. Patitz

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

Emerging Technologies · Computer Science 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

Harnessing the intrinsic dynamics of physical systems for information processing opens new avenues for computation embodied in matter. Using simulations of a model system, we show that assemblies of DNA tiles capable of self-organizing into…

Soft Condensed Matter · Physics 2025-10-23 Tim E. Veenstra , René van Roij , Marjolein Dijkstra

In self-assembling systems, geometric frustration leads to complex states characterized by internal gradients of shape misfit. Frustrated assemblies have drawn recent interest due to the unique possibility that their thermodynamics can…

Soft Condensed Matter · Physics 2023-08-08 Nicholas W. Hackney , Christopher Amey , Gregory M. Grason

Reliability and availability analysis are essential in dependable critical embedded systems. The classical implementation of dependability for an embedded system relies on merging both fundamental structures with the required dependability…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-14 Mahmoud I. Banat , Belal H. Sababha , Sami Al-Hamdan

The tolerancing process links the virtual and the real worlds. From the former, tolerances define a variational geometrical language (geometric parameters). From the latter, there are values limiting those parameters. The beginning of a…

Other Computer Science · Computer Science 2010-02-02 Serge Samper , Pierre-Antoine Adragna , Hugues Favreliere , Maurice Pillet

In this paper, we investigate shape-assembling power of a tile-based model of self-assembly called the Signal-Passing Tile Assembly Model (STAM). In this model, the glues that bind tiles together can be turned on and off by the binding…

Formal Languages and Automata Theory · Computer Science 2022-06-09 Andrew Alseth , Daniel Hader , Matthew J. Patitz

Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This…

Computational Complexity · Computer Science 2015-03-13 David Doty

This paper is about partitioning in parallel and distributed simulation. That means decomposing the simulation model into a numberof components and to properly allocate them on the execution units. An adaptive solution based on…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-07 Gabriele D'Angelo

In this paper we propose a research programme for getting structural characterisations for 2-dimensional languages generated by self-assembling tiles. This is part of a larger programme on getting a formal foundation of parallel,…

Formal Languages and Automata Theory · Computer Science 2015-06-19 Gheorghe Stefanescu

The idle computers on a local area, campus area, or even wide area network represent a significant computational resource---one that is, however, also unreliable, heterogeneous, and opportunistic. This type of resource has been used…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Adriana Iamnitchi , Ian Foster

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

Computational Complexity · Computer Science 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

Three results are shown on producibility in the hierarchical model of tile self-assembly. It is shown that a simple greedy polynomial-time strategy decides whether an assembly A is producible. The algorithm can be optimized to use O(|A|…

Data Structures and Algorithms · Computer Science 2013-05-02 David Doty

The structures for the expression of fault-tolerance provisions into the application software are the central topic of this dissertation. Structuring techniques provide means to control complexity, the latter being a relevant factor for the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-08 Vincenzo De Florio

The abstract tile assembly model (aTam) is a model of DNA self-assembly. Most of the studies focus on cooperative aTAM where a form of synchronization between the tiles is possible. Simulating Turing machines is achievable in this context.…

Computational Complexity · Computer Science 2026-05-11 Sergiu Ivanov , Damien Regnault

In this paper we explore the power of tile self-assembly models that extend the well-studied abstract Tile Assembly Model (aTAM) by permitting tiles of shapes beyond unit squares. Our main result shows the surprising fact that any aTAM…

Data Structures and Algorithms · Computer Science 2012-12-20 Erik D. Demaine , Martin L. Demaine , Sándor P. Fekete , Matthew J. Patitz , Robert T. Schweller , Andrew Winslow , Damien Woods