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Inferring dynamical models from low-resolution temporal data continues to be a significant challenge in biophysics, especially within transcriptomics, where separating molecular programs from noise remains an important open problem. We…

Machine Learning · Computer Science 2023-10-05 Victor Chardès , Suryanarayana Maddu , Michael J. Shelley

We explore the impact of different forms of stochasticity on the expansion dynamics of a stochastic growth model called the $\infty$-parent spatial $\Lambda$-Fleming Viot process. This process belongs to a family of population genetics…

Probability · Mathematics 2025-07-31 Jan Lukas Igelbrink , Apolline Louvet

We investigate the evolution of matter density perturbations within a fractional cosmological framework inspired by fractal space-time constructions in field theory, where a deformation of the integration measure induces non-locality and…

General Relativity and Quantum Cosmology · Physics 2026-04-24 S. M. M. Rasouli

The onset of stochasticity is measured in $\Lambda$CDM cosmological simulations using a set of classical observables. It is quantified as the local derivative of the logarithm of the dispersion of a given observable (within a set of…

Astrophysics · Physics 2009-11-13 Jerome Thiebaut , Christophe Pichon , Thierry Sousbie , Simon Prunet , D. Pogosyan

We study a generalised model of population growth in which the state variable is population growth rate instead of population size. Stochastic parametric perturbations, modelling phenotypic variability, lead to a Langevin system with two…

Populations and Evolution · Quantitative Biology 2010-10-15 Harold P. de Vladar , Ido Pen

We consider the influence of stochastic perturbations on stability of a unique positive equilibrium of a difference equation subject to prediction-based control. These perturbations may be multiplicative $$x_{n+1}=f(x_n)-\left( \alpha +…

Dynamical Systems · Mathematics 2016-06-08 Elena Braverman , Conall Kelly , Alexandra Rodkina

It has been generally recognized that stochasticity can play an important role in the information processing accomplished by reaction networks in biological cells. Most treatments of that stochasticity employ Gaussian noise even though it…

Molecular Networks · Quantitative Biology 2015-05-30 Neda Bostani , David A. Kessler , Nadav M. Shnerb , Wouter-Jan Rappel , Herbert Levine

For cellular biochemical reaction systems where the numbers of molecules is small, significant noise is associated with chemical reaction events. This molecular noise can give rise to behavior that is very different from the predictions of…

Molecular Networks · Quantitative Biology 2009-11-13 Matthew Scott , Terence Hwa , Brian Ingalls

We prove pathwise convergence of the layerwise evolution of tokens in a finite-depth, finite-width transformer model with MultiLayer Perceptron (MLP) blocks to a continuous-time stochastic interacting particle system. We also identify the…

Probability · Mathematics 2026-04-30 Andrea Agazzi , Giuseppe Bruno , Eloy Mosig García , Samuele Saviozzi , Marco Romito

We study the effects of additive and multiplicative noise on the solution landscape of nematic liquid crystals confined to a square domain within the Landau-de Gennes framework, as well as the impact of additive noise on the symmetric…

Soft Condensed Matter · Physics 2023-08-15 James Luke Dalby , Apala Majumdar , Yue Wu , Asha Kisan Dond

We develop a stochastic formulation of cosmology in the early universe, after considering the scatter in the redshift-apparent magnitude diagram in the early epochs as an observational evidence for the non-deterministic evolution of early…

Astrophysics · Physics 2015-06-24 C. Sivakumar , Moncy V. John , K. Babu Joseph

We study a stochastic model for tumor cell growth with both multiplicative and additive colored noise as well as a non-zero cross-correlations in between. Whereas the death rate within the logistic model is altered by a deterministic term…

Cell Behavior · Quantitative Biology 2015-05-13 Thomas Bose , Steffen Trimper

We study how environmental stochasticity influences the long-term population size in certain one- and two-species models. The difficulty is that even when one can prove that there is persistence, it is usually impossible to say anything…

Populations and Evolution · Quantitative Biology 2025-07-15 Alexandru Hening , Siddharth Sabharwal

A parameter estimation problem is considered for a one-dimensional stochastic wave equation driven by additive space-time Gaussian white noise. The estimator is of spectral type and utilizes a finite number of the spatial Fourier…

Probability · Mathematics 2008-10-02 W. Liu , S. V. Lototsky

We present the numerical estimation of noise parameter induced in the dynamics of the variables by random particle interactions involved in the stochastic chemical oscillator and use it as order parameter to detect the transition from…

Computational Physics · Physics 2011-09-02 R. K. Brojen Singh

Evolutionary game theory has traditionally employed deterministic models to describe population dynamics. These models, due to their inherent nonlinearities, can exhibit deterministic chaos, where population fluctuations follow complex,…

Populations and Evolution · Quantitative Biology 2025-04-02 Maria Alejandra Ramirez , George Datseris , Arne Traulsen

Stochastic averaging problems with Gaussian forcing have been studied thoroughly for many years, but far less attention has been paid to problems where the stochastic forcing has infinite variance, such as an {\alpha}-stable noise forcing.…

Dynamical Systems · Mathematics 2017-05-24 William F. Thompson , Rachel A. Kuske , Adam. H. Monahan

We investigate instabilities in a stochastic mathematical model of cochlear dynamics. The cochlea is modeled as a spatio-temporal dynamical system made up of a spatially distributed array of coupled oscillators, together with the cochlear…

Biological Physics · Physics 2018-09-10 Maurice Filo , Bassam Bamieh

It is shown that the evolution of the density perturbations during certain eras of substantial entropy generation in the universe can be described in the scheme of the KPZ equation. Therefore, the influence on cosmological structure…

Astrophysics · Physics 2009-10-22 A. Berera , L. Z. Fang

Recent theoretical studies have shown that demographic stochasticity can greatly increase the tendency of asexually reproducing phenotypically diverse organisms to spontaneously evolve into localised clusters, suggesting a simple mechanism…

Populations and Evolution · Quantitative Biology 2016-03-23 Luis F. Lafuerza , Alan J. McKane