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In this paper, we introduce a novel and general method for computing partition functions of solvable lattice models with free fermionic Boltzmann weights. The method is based on the ``permutation graph'' and the ``$F$-matrix'': the…

Mathematical Physics · Physics 2022-11-15 Chenyang Zhong

Graphical models represent multivariate and generally not normalized probability distributions. Computing the normalization factor, called the partition function, is the main inference challenge relevant to multiple statistical and…

Machine Learning · Computer Science 2020-09-01 Michael Chertkov , Vladimir Chernyak , Yury Maximov

One of the fundamental tasks of science is to find explainable relationships between observed phenomena. One approach to this task that has received attention in recent years is based on probabilistic graphical modelling with sparsity…

Machine Learning · Statistics 2014-04-16 Peter Orchard , Felix Agakov , Amos Storkey

Graphity models are characterized by configuration spaces in which states correspond to graphs and Hamiltonians that depend on local properties of graphs such as the degrees of vertices and numbers of short cycles. As statistical systems,…

High Energy Physics - Theory · Physics 2008-11-26 Tomasz Konopka

Fermionic Gaussian operators are foundational tools in quantum many-body theory, numerical simulation of fermionic dynamics, and fermionic linear optics. While their structure is fully determined by two-point correlations, evaluating their…

Quantum Physics · Physics 2025-06-04 M. A. Rajabpour , MirAdel Seifi MirJafarlou , Reyhaneh Khasseh

A well known theorem due to Kasteleyn states that the partition function of an Ising model on an arbitrary planar graph can be represented as the Pfaffian of a skew-symmetric matrix associated to the graph. This results both embodies the…

Mathematical Physics · Physics 2013-12-30 Thierry Gobron

We discuss some aspects of a new noncombinatorial fermionic approach to the two-dimensional dimer problem in statistical mechanics based on the integration over anticommuting Grassmann variables and factorization ideas for dimer density…

Statistical Mechanics · Physics 2007-05-23 R. Hayn , V. N. Plechko

Graphical models describe associations between variables through the notion of conditional independence. Gaussian graphical models are a widely used class of such models where the relationships are formalized by non-null entries of the…

Methodology · Statistics 2023-08-08 Sagnik Bhadury , Riten Mitra , Jeremy T. Gaskins

Given a complete graph with positive weights on its edges, we define the weight of a subset of edges as the product of weights of the edges in the subset and consider sums (partition functions) of weights over subsets of various kinds:…

Combinatorics · Mathematics 2013-05-14 Alexander Barvinok

Graphical models are ubiquitous tools to describe the interdependence between variables measured simultaneously such as large-scale gene or protein expression data. Gaussian graphical models (GGMs) are well-established tools for…

Methodology · Statistics 2020-01-09 Nilabja Guha , Veera Baladandayuthapani , Bani K. Mallick

Graphical modeling explores dependences among a collection of variables by inferring a graph that encodes pairwise conditional independences. For jointly Gaussian variables, this translates into detecting the support of the precision…

Methodology · Statistics 2018-02-16 Shota Katayama , Hironori Fujisawa , Mathias Drton

Although symmetry methods and analysis are a necessary ingredient in every physicist's toolkit, rather less use has been made of combinatorial methods. One exception is in the realm of Statistical Physics, where the calculation of the…

Quantum Physics · Physics 2007-05-23 Allan I. Solomon , Pawel Blasiak , Gerard Duchamp , Andrzej Horzela , Karol A. Penson

We consider a refinement of the partition function of graph homomorphisms and present a quasi-polynomial algorithm to compute it in a certain domain. As a corollary, we obtain quasi-polynomial algorithms for computing partition functions…

Combinatorics · Mathematics 2015-08-04 Alexander Barvinok , Pablo Soberón

Bayesian estimation of Gaussian graphical models has proven to be challenging because the conjugate prior distribution on the Gaussian precision matrix, the G-Wishart distribution, has a doubly intractable partition function. Recent…

Neurons and Cognition · Quantitative Biology 2014-09-10 Max Hinne , Alex Lenkoski , Tom Heskes , Marcel van Gerven

This paper is the first in the series devoted to evaluation of the partition function in statistical models on graphs with loops in terms of the Berezin/fermion integrals. The paper focuses on a representation of the determinant of a square…

Statistical Mechanics · Physics 2010-05-27 Vladimir Y. Chernyak , Michael Chertkov

Gaussian graphical models are parametric statistical models for jointly normal random variables whose dependence structure is determined by a graph. In previous work, we introduced trek separation, which gives a necessary and sufficient…

Combinatorics · Mathematics 2012-10-02 Jan Draisma , Seth Sullivant , Kelli Talaska

The Gaussian graphical model (GGM) incorporates an undirected graph to represent the conditional dependence between variables, with the precision matrix encoding partial correlation between pair of variables given the others. To achieve…

Methodology · Statistics 2023-07-03 Yueqi Qian , Xianghong Hu , Can Yang

Partition functions of certain classes of "spin glass" models in statistical physics show strong connections to combinatorial graph invariants. Also known as homomorphism functions they allow for the representation of many such invariants,…

Computational Complexity · Computer Science 2010-04-08 Marc Thurley

In this paper, we explain a connection between a family of free-fermionic six-vertex models and a discrete time evolution operator on one-dimensional Fermionic Fock space. The family of ice models generalize those with domain wall boundary,…

Combinatorics · Mathematics 2016-06-02 Ben Brubaker , Andrew Schultz

The monopole-dimer model is a signed variant of the monomer-dimer model which has determinantal structure. We extend the monopole-dimer model for planar graphs (Math. Phys. Anal. Geom., 2015) to Cartesian products thereof and show that the…

Combinatorics · Mathematics 2024-04-30 Anita Arora , Arvind Ayyer
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