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COPASI is a popular application for simulation and analysis of biochemical networks and their dynamics. While this software is widely used, it works as a standalone application and until now it was not possible for users to interact with…

Molecular Networks · Quantitative Biology 2021-10-11 Abhishekh Gupta , Pedro Mendes

A cosmology calculator that computes times and distances as a function of redshift for user-defined cosmological parameters is available on the World Wide Web. This note gives the formulae used by the cosmology calculator and discusses some…

Astrophysics · Physics 2010-04-21 Edward L. Wright

Astrophysics lies at the crossroads of big datasets (such as the Large Synoptic Survey Telescope and Gaia), open source software to visualize and interpret high dimensional datasets (such as Glue, WorldWide Telescope, and OpenSpace), and…

For centuries, the rich nocturnal environment of the starry sky could be modelled only by analogue tools such as paper planispheres, atlases, globes and numerical tables. The immersive sky simulator of the twentieth century, the…

Instrumentation and Methods for Astrophysics · Physics 2021-04-05 Georg Zotti , Susanne M Hoffmann , Alexander Wolf , Fabien Chéreau , Guillaume Chéreau

We propose a series of features for the graphical user interface (GUI) of the COmputational MOdule Integrator (COMODI) \cite{Synasc05a}\cite{COMODI}. In view of the special requirements that a COMODI type of framework for scientific…

Human-Computer Interaction · Computer Science 2016-08-16 Zsolt I. Lázár , Andreea Fanea , Dragoş Petraşcu , Vladiela Ciobotariu-Boer , Bazil Pârv

An end-to-end platform for chemical science research has been developed that integrates data from computational and experimental approaches through a modern web-based interface. The platform offers a highly interactive visualization and…

Software Engineering · Computer Science 2017-07-17 Marcus D. Hanwell , Wibe A. de Jong , Christopher J. Harris

The Semantic Web through technologies such to support the canonical representation information and presenting it to users in a method by which its meaning can be understood or at least communi- cated and interpreted by all parties. As the…

Networking and Internet Architecture · Computer Science 2008-08-12 Ian Oliver , Jukka Honkola

In this manuscript, we propose to expand the use of scientific repositories such as Zenodo and HEP Data, in particular in order to better examine multi-parametric solutions of physical models. The implementation of interactive web-based…

High Energy Physics - Experiment · Physics 2020-11-10 Faruk Diblen , Luc Hendriks , Bob Stienen , Sascha Caron , Rena Bakhshi , Jisk Attema

The Web is becoming more and more a wide software framework on which each one can compose and use contents, software applications and services. It can offer adequate computational resources to manage the complexity implied by the use of the…

Human-Computer Interaction · Computer Science 2017-04-05 Patrizia Grifoni , Fernando Ferri , Maria Chiara Caschera , Arianna D'Ulizia , Mauro Mazzei

We propose a method for constructing the specific heat for the universe by following standard definitions of classical thermodynamics, in a spatially flat homogeneous and isotropic spacetime. We use cosmography to represent the specific…

General Relativity and Quantum Cosmology · Physics 2013-04-11 Orlando Luongo , Hernando Quevedo

Astronomical researchers often think of analysis and visualization as separate tasks. In the case of high-dimensional data sets, though, interactive exploratory data visualization can give far more insight than an approach where data…

Instrumentation and Methods for Astrophysics · Physics 2015-06-05 Alyssa A. Goodman

Over the past decade, exoplanet atmospheric characterization has became what some might call the cosmology of astronomy. In an attempt to extract and understand the weak planetary signals (a few percent down to a few tens of ppm times that…

Earth and Planetary Astrophysics · Physics 2024-04-01 Patricio E. Cubillos

In the last decades, scientific software has graduated from a hidden side-product to a first-class member of the astrophysics literature. We aim to quantify the activity and impact of software development for astronomy, using a systematic…

Instrumentation and Methods for Astrophysics · Physics 2025-12-12 Johannes Buchner

The purpose of these lectures is to give a short introduction into a very vast field of numerical simulations for cosmological applications. I focus on major features of the simulations: the equations, main numerical techniques, effects of…

Astrophysics · Physics 2008-02-03 A. Klypin

Interactive visualization of astronomical catalogs requires novel techniques due to the huge volumes and complex structure of the data produced by existing and upcoming astronomical surveys. The creation as well as the disclosure of the…

Instrumentation and Methods for Astrophysics · Physics 2015-05-30 Hugo Buddelmeijer , Edwin A. Valentijn

Numerical simulations have become a necessary tool to describe the complex interactions among the different processes involved in galaxy formation and evolution, unfeasible via an analytic approach. The last decade has seen a great effort…

Astrophysics of Galaxies · Physics 2017-07-19 Alessandro Lupi , Marta Volonteri , Joseph Silk

We introduce the Mechanic, a new open-source code framework. It is designed to reduce the development effort of scientific applications by providing unified API (Application Programming Interface) for configuration, data storage and task…

Instrumentation and Methods for Astrophysics · Physics 2015-06-18 Mariusz Słonina , Krzysztof Goździewski , Cezary Migaszewski

GrayStar is a stellar atmospheric and spectral line modelling, post-processing, and visualisation code, suitable for classroom demonstrations and laboratory-style assignments, that has been developed in Java and deployed in JavaScript and…

Instrumentation and Methods for Astrophysics · Physics 2014-09-08 C. Ian Short

SkyPy is an open-source Python package for simulating the astrophysical sky. It comprises a library of physical and empirical models across a range of observables and a command-line script to run end-to-end simulations. The library provides…

The rapid growth in scale and complexity of both computational and observational astrophysics over the past decade necessitates efficient and intuitive methods for examining and visualizing large datasets. Here, I present {\it AstroBlend},…

Instrumentation and Methods for Astrophysics · Physics 2016-02-11 J. P. Naiman
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