Related papers: Dynamics of charged molecular strands
We have recently presented an extension of the standard variational calculus to include the presence of deformed derivatives in the Lagrangian of a system of particles and in the Lagrangian density of field-theoretic models. Classical…
The multiphase Whitham modulation equations with $N$ phases have $2N$ characteristics which may be of hyperbolic or elliptic type. In this paper a nonlinear theory is developed for coalescence, where two characteristics change from…
We present a self-consistent two-dimensional fluid model of the temporal and spatial development of the One Atmosphere Uniform Glow Discharge Plasma (OAUGDP$^{\circledR}$). Continuity equations for electrically charged species N$_2^+$,…
A Hamiltonian formulation of generic many-particle systems with space-dependent balanced loss and gain coefficients is presented. It is shown that the balancing of loss and gain necessarily occurs in a pair-wise fashion. Further, using a…
We derive the equations of motion for the dynamics of a porous media filled with an incompressible fluid. We use a variational approach with a Lagrangian written as the sum of terms representing the kinetic and potential energy of the…
We investigate the nonlinear dynamics of the Peyrard-Bishop DNA model taking into account site dependent inhomogeneities. By means of the multiple-scale expansion in the semi-discrete approximation, the dynamics is governed by the perturbed…
We study the nonlinear dynamics of a completely inhomogeneous DNA chain which is governed by a perturbed sine-Gordon equation. A multiple scale perturbation analysis provides perturbed kink-antikink solitons to represent open state…
In this paper we define a causal Lorentz covariant noncommutative (NC) classical Electrodynamics. We obtain an explicit realization of the NC theory by solving perturbatively the Seiberg-Witten map. The action is polynomial in the field…
Classical dynamical laws are conventionally formulated as closed evolution equations defined on fixed geometric backgrounds and a global time parameter. We develop a formulation in which neither prescribed evolution laws nor an external…
This work considers charged systems described by the modified Poisson--Nernst--Planck (PNP) equations, which incorporate ionic steric effects and the Born solvation energy for dielectric inhomogeneity. Solving the steady-state modified PNP…
Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…
We propose a local, O(N) molecular dynamics algorithm for the simulation of charged systems. The long ranged Coulomb potential is generated by a propagating electric field that obeys modified Maxwell equations. On coupling the…
We report results of systematic investigation of dynamics featured by moving two-dimensional (2D) solitons generated by the fractional nonlinear Schroedinger equation (FNLSE) with the cubic-quintic nonlinearity. The motion of solitons is a…
Born-Infeld nonlinear electrodynamics with point singularities having both electric and magnetic charges are considered. Problem of interaction between the associated soliton dyon solutions is investigated. For the case of long-range…
In this paper, we construct for the first time the non-commutative fluid with the deformed Poincare invariance. To this end, the realization formalism of the noncommutative spaces is employed and the results are particularized to the Snyder…
The goal of this article is to investigate the dynamics of semi-relativistic or non-relativistic charged particles in interaction with a scalar meson field. Our main contribution is the derivation of the classical dynamics of a…
We discuss a discretization by polygonal lines of the Euler-Bernoulli bending energy and of Euler elasticae under clamped boundary conditions. We show Hausdorff convergence of the set of almost minimizers of the discrete bending energy to…
We investigate the electromagnetic dynamics of spin-nondegenerate classical particle models arising from Lorentz-violating sectors of the Standard-Model Extension, focusing on the $b_\mu$ background. Starting from the type-2 relativistic…
Vorticity dynamics of the three-dimensional incompressible Euler equations is cast into a quaternionic representation governed by the Lagrangian evolution of the tetrad consisting of the growth rate and rotation rate of the vorticity. In…
We introduce a new class of nonlocal nonlinear conservation laws in one space dimension that allow for nonlocal interactions over a finite horizon. The proposed model, which we refer to as the nonlocal pair interaction model, inherits at…