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Auto-chemotaxis, the directed movement of cells along gradients in chemicals they secrete, is central to the formation of complex spatiotemporal patterns in biological systems. Since the introduction of the Keller--Segel model, numerous…

Soft Condensed Matter · Physics 2025-11-18 Henrik Weyer , David Muramatsu , Erwin Frey

Chemotaxis allows single cells to self-organize at the population level, as classically described by Keller-Segel models. We show that chemotactic aggregation can be understood using a generalized Maxwell construction based on the balance…

Soft Condensed Matter · Physics 2025-11-18 Henrik Weyer , David Muramatsu , Erwin Frey

We investigate aggregation and fragmentation dynamics of tracers and inertial aggregates in random flows leading to steady state size distributions. Our objective is to elucidate the impact of changes in aggregation rates, due to…

Fluid Dynamics · Physics 2017-06-19 Ksenia Guseva , Ulrike Feudel

Microorganisms can preferentially orient and move along gradients of a chemo-attractant (i.e., chemotax) while colonies of many microorganisms can collectively undergo complex dynamics in response to chemo-attractants that they themselves…

Biological Physics · Physics 2013-10-30 Enkeleida Lushi , Raymond E. Goldstein , Michael J. Shelley

We consider the singular limit of a chemotaxis model of bacterial collective motion recently introduced in arXiv:2009.11048 [math.AP]. The equation models aggregation-diffusion phenomena with advection that is discontinuous and depends…

Analysis of PDEs · Mathematics 2025-08-28 Maria Gualdani , Mikel Ispizua , Nicola Zamponi

Chemotactic singularity formation in the context of the Patlak-Keller-Segel equation is an extensively studied phenomenon. In recent years, it has been shown that the presence of fluid advection can arrest the singularity formation given…

Analysis of PDEs · Mathematics 2025-02-14 Zhongtian Hu , Alexander Kiselev , Yao Yao

In micro-swimmer suspensions locomotion necessarily generates fluid motion, and it is known that such flows can lead to collective behavior from unbiased swimming. We examine the complementary problem of how chemotaxis is affected by…

Biological Physics · Physics 2012-10-23 Enkeleida Lushi , Raymond E. Goldstein , Michael J. Shelley

Chemotaxis systems of Keller--Segel type constitute one of the central mathematical frameworks for understanding aggregation phenomena in biological and ecological systems. Over the past decades, the theory has evolved from the classical…

Analysis of PDEs · Mathematics 2026-03-06 Kolade M Owolabi , Eben Mare , Clara O Ijalana , Kolawole S Adegbie

The capacity to aggregate through chemosensitive movement forms a paradigm of self-organisation, with examples spanning cellular and animal systems. A basic mechanism assumes a phenotypically homogeneous population that secretes its own…

Analysis of PDEs · Mathematics 2022-09-26 Fiona R Macfarlane , Tommaso Lorenzi , Kevin J Painter

Micro-organisms aggregate through chemotaxis against a concentration gradient of signals secreted by themselves. We have numerically studied a model consisting of elements with intracellular dynamics, random walks with a state-dependent…

Statistical Mechanics · Physics 2007-10-31 Masayo Inoue , Kunihiko Kaneko

Inertial particles advected in chaotic flows often accumulate in strange attractors. While moving in these fractal sets they usually approach each other and collide. Here we consider inertial particles aggregating upon collision. The new…

Fluid Dynamics · Physics 2009-11-13 Jens C. Zahnow , Rafael D. Vilela , Ulrike Feudel , Tamas Tel

Many small organisms such as bacteria can attract each other by depositing chemical attractants. At the same time, they exert repulsive force on each other when crowded, which can be modeled by effective pressure as an increasing function…

Statistical Mechanics · Physics 2019-09-04 Gyu Ho Bae , Seung Ki Baek

The purpose of this work is the study of \textit{chemotaxis} and how to model it through the equations of Keller-Segel. \textit{Chemotaxis} is a natural process which induces the organisms to direct their movement according to certain…

Analysis of PDEs · Mathematics 2021-11-24 Alejandro Fernández-Jiménez

We explore analytically and numerically agglomeration driven by advection and localized source. The system is inhomogeneous in one dimension, viz. along the direction of advection. We analyze a simplified model with mass-independent…

We investigate the aggregation kinetics of sedimenting particles theoretically and numerically, using the advection-diffusion equation. Agglomeration, caused by both transport mechanisms (diffusion and advection), is important for small…

Statistical Mechanics · Physics 2022-11-07 Rishat R. Zagidullin , Alexander P. Smirnov , Sergey A. Matveev , Nikolai V. Brilliantov

In an incompressible flow, fluid density remains invariant along fluid element trajectories. This implies that the spatial distribution of non-interacting noninertial particles in such flows cannot develop density inhomogeneities beyond…

Fluid Dynamics · Physics 2019-01-30 Gábor Drótos , Pedro Monroy , Emilio Hernández-García , Cristóbal López

A discrete-time model of reacting evolving fields, transported by a bidimensional chaotic fluid flow, is studied. Our approach is based on the use of a Lagrangian scheme where {\it fluid particles} are advected by a $2d$ symplectic map…

We study two models of overdamped self-propelled disks in two dimensions, with and without aligning interactions. Active mesoscale flows leading to chaotic advection emerge in both models in the homogeneous dense fluid away from dynamical…

Soft Condensed Matter · Physics 2024-06-07 Yann-Edwin Keta , Juliane Klamser , Robert L. Jack , Ludovic Berthier

We investigate a class of aggregation-diffusion equations with strongly singular kernels and weak (fractional) dissipation in the presence of an incompressible flow. Without the flow the equations are supercritical in the sense that the…

Analysis of PDEs · Mathematics 2020-06-09 Katharina Hopf , José L. Rodrigo

A chemotaxis-diffusion-convection coupling system for describing a form of buoyant convection in which the fluid develops convection cells and plume patterns will be investigated numerically in this study. Based on the two-dimensional…

Fluid Dynamics · Physics 2015-02-19 Yannick Deleuze , Chen-Yu Chiang , Marc Thiriet , Tony W. H. Sheu
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