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One of the defining features of living systems is their adaptability to changing environmental conditions. This requires organisms to extract temporal and spatial features of their environment, and use that information to compute the…

Neurons and Cognition · Quantitative Biology 2024-02-27 Maria Sol Vidal-Saez , Oscar Vilarroya , Jordi Garcia-Ojalvo

We suggest to simulate evolution of complex organisms constrained by the sole requirement of robustness in their expression patterns. This scenario is illustrated by evolving discrete logical networks with epigenetic properties. Evidence…

Statistical Mechanics · Physics 2007-05-23 Stefan Bornholdt , Kim Sneppen

Inferring from inconsistency and making decisions are two problems which have always been treated separately by researchers in Artificial Intelligence. Consequently, different models have been proposed for each category. Different…

Artificial Intelligence · Computer Science 2012-07-09 Leila Amgoud

There has been a long debate on how new levels of organization have evolved. It might seem unlikely, as cooperation must prevail over competition. One well-studied example is the emergence of autocatalytic sets, which seem to be a…

Populations and Evolution · Quantitative Biology 2026-02-16 Sean P. Maley , Carlos Gershenson , Stuart A. Kauffman

Foundation models (FMs) have recently opened up new frontiers in the field of artificial life (ALife) by providing powerful tools to automate search through ALife simulations. Previous work aligns ALife simulations with natural language…

Artificial Intelligence · Computer Science 2025-09-29 Nikhil Baid , Hannah Erlebach , Paul Hellegouarch , Frederico Wieser

Learning Analytics (LA) has rapidly expanded through practical and technological innovation, yet its foundational identity has remained theoretically under-specified. This paper addresses this gap by proposing the first axiomatic theory…

Computers and Society · Computer Science 2025-12-12 Kensuke Takii , Changhao Liang , Hiroaki Ogata

Living soft tissues appear to promote the development and maintenance of a preferred mechanical state within a defined tolerance around a so-called set-point. This phenomenon is often referred to as mechanical homeostasis. In contradiction…

Computational Engineering, Finance, and Science · Computer Science 2021-09-23 Jonas F. Eichinger , Maximilian J. Grill , Iman Davoodi Kermani , Roland C. Aydin , Wolfgang A. Wall , Jay D. Humphrey , Christian J. Cyron

Trust and reputation models for distributed, collaborative systems have been studied and applied in several domains, in order to stimulate cooperation while preventing selfish and malicious behaviors. Nonetheless, such models have received…

Logic in Computer Science · Computer Science 2016-07-11 Alessandro Aldini

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

Molecular Networks · Quantitative Biology 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

The emergence of life from inanimate matter presents a thermodynamic challenge: the Second Law of Thermodynamics dictates a global trend towards disorder, yet life constitutes localized pockets of profound organization. This paper presents…

Statistical Mechanics · Physics 2026-03-17 Shlomo Segal

The advent of big data has vast potential for discovery in natural phenomena ranging from climate science to medicine, but overwhelming complexity stymies insight. Existing theory is often not able to succinctly describe salient phenomena,…

Machine Learning · Computer Science 2021-06-25 Bryan E. Kaiser , Juan A. Saenz , Maike Sonnewald , Daniel Livescu

Living systems transmit heritable information using the replicating gene sequences and the cycling regulators assembled around gene sequences. Here I develop a framework for heredity and development that includes the cycling regulators…

Other Quantitative Biology · Quantitative Biology 2020-03-03 Antony M Jose

Leadership plays a key role in social animals, including humans, decision-making and coalescence in coordinated activities such as hunting, migration, sport, diplomatic negotiation etc. In these coordinated activities, leadership is a…

Social and Information Networks · Computer Science 2021-04-07 Chainarong Amornbunchornvej , Tanya Berger-Wolf

In current practice a formal analysis of hybrid system models is assertion-based. The work presented here is based on features that look beyond functional correctness toward a quantitative evaluation of behavioral attributes. A feature…

Logic in Computer Science · Computer Science 2019-02-25 Antonio Anastasio Bruto da Costa , Goran Frehse , Pallab Dasgupta

Feature transformation aims to reconstruct the feature space of raw features to enhance the performance of downstream models. However, the exponential growth in the combinations of features and operations poses a challenge, making it…

Machine Learning · Computer Science 2024-12-19 Nanxu Gong , Chandan K. Reddy , Wangyang Ying , Haifeng Chen , Yanjie Fu

Symbolic world modeling requires inferring and representing an environment's transitional dynamics as an executable program. Prior work has focused on largely deterministic environments with abundant interaction data, simple mechanics, and…

Artificial Intelligence · Computer Science 2026-04-09 Zaid Khan , Archiki Prasad , Elias Stengel-Eskin , Jaemin Cho , Mohit Bansal

A general and basic model of primordial evolution--a soup of reacting finitary and discrete processes--is employed to identify and analyze fundamental mechanisms that generate and maintain complex structures in prebiotic systems. The…

Populations and Evolution · Quantitative Biology 2016-11-23 Olof Gornerup , James P. Crutchfield

Abstraction is a powerful idea widely used in science, to model, reason and explain the behavior of systems in a more tractable search space, by omitting irrelevant details. While notions of abstraction have matured for deterministic…

Artificial Intelligence · Computer Science 2020-01-14 Vaishak Belle

In this paper, we present a modelling experiment developed to study systems of cities and processes of urbanisation in large territories over long time spans. Building on geographical theories of urban evolution, we rely on agent-based…

Palaeoclimate archives contain information on climate variability, trends and mechanisms. Models are developed to explain observations and predict the response of the climate system to perturbations, in particular perturbations associated…

Atmospheric and Oceanic Physics · Physics 2012-09-13 Michel Crucifix