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The spread of metastases is a crucial process in which some questions remain unanswered. In this work, we focus on tumor cells circulating in the bloodstream, the so-called Circulating Tumor Cells (CTCs). Our aim is to characterize their…

Tissues and Organs · Quantitative Biology 2025-01-22 Giorgia Ciavolella , Julien Granet , Jacky Goetz , Nael Osmani , Christèle Etchegaray , Annabelle Collin

The effect of disorder in the energetic heights and in the physical locations of fence barriers encountered by transmembrane molecules such as proteins and lipids in their motion in cell membranes is studied theoretically. The investigation…

Biological Physics · Physics 2009-11-13 Z. Kalay , P. E. Parris , V. M. Kenkre

Cell wall proteins are essential constituents of plant cell walls; they are involved in modifications of cell wall components, wall structure, signaling and interactions with plasma membrane proteins at the cell surface. The application of…

Genomics · Quantitative Biology 2016-08-16 Elisabeth Jamet , Hervé Canut , Georges Boudart , Rafael F Pont-Lezica

Biomimetic membranes in contact with a planar substrate or a second membrane are studied theoretically. The membranes contain specific adhesion molecules (stickers) which are attracted by the second surface. In the absence of stickers, the…

Soft Condensed Matter · Physics 2016-08-31 Thomas R. Weikl , David Andelman , Shigeyuki Komura , Reinhard Lipowsky

Cell adhesion complexes (CACs), which are activated by ligand binding, play key roles in many cellular functions ranging from cell cycle regulation to mediation of cell extracellular matrix adhesion. Inspired by single molecule pulling…

Biomolecules · Quantitative Biology 2018-04-04 Ngo Min Toan , D. Thirumalai

A theoretical model based on the molecular interactions between a growing tumor and a dynamically evolving blood vessel network describes the transformation of the regular vasculature in normal tissues into a highly inhomogeneous tumor…

Tissues and Organs · Quantitative Biology 2007-05-23 D. -S. Lee , H. Rieger , K. Bartha

Electromagnetic field fluctuations are responsible for the destruction of electron coherence (dephasing) in solids and in vacuum electron beam interference. The vacuum fluctuations are modified by conductors and dielectrics, as in the…

Quantum Physics · Physics 2016-09-08 Yehoshua Levinson

A common mechanism for intracellular transport is the use of controlled deformations of the membrane to create spherical or tubular buds. While the basic physical properties of homogeneous membranes are relatively well-known, the effects of…

Biological Physics · Physics 2009-11-10 Jean-Marc Allain , Cornelis Storm , Aurelien Roux , Martine Ben Amar , Jean-Francois Joanny

The proper functions of tissues depend on the ability of cells to withstand stress and maintain shape. Central to this process is the cytoskeleton, comprised of three polymeric networks: F-actin, microtubules, and intermediate filaments.…

Biological Physics · Physics 2020-08-25 Alison E. Patteson , Robert J. Carroll , Daniel V. Iwamoto , Paul A. Janmey

Porphyrin molecules can form stable single molecule junctions without anchoring groups. Adding thiol end groups and pyridine axial groups yields more stable junctions with an increased spread in low-bias conductance. This is a result of…

Learning how proteins fold will hardly have any impact in the way conventional -- active site centered -- drugs are designed. On the other hand, this knowledge is proving instrumental in defining a new paradigm for the identification of…

Biomolecules · Quantitative Biology 2012-03-16 R. A. Broglia

The Vertex Model for epithelia models the apical surface of the tissue by a tiling, with polygons representing cells and edges representing cell-cell junctions. The mechanics are described by an energy governed by deviations from a target…

Biological Physics · Physics 2024-10-10 Michael F. Staddon , Carl D. Modes

Plasma membranes appear as deformable systems wherein molecules are free to move and diffuse giving rise to condensed microdomains (composed of ordered lipids, transmembrane proteins and cholesterol) surrounded by disordered lipid…

Soft Condensed Matter · Physics 2024-09-25 Chiara Bernard , Angelo Rosario Carotenuto , Nicola Maria Pugno , Luca Deseri , Massimiliano Fraldi

Cross-links are considered to be a key component of collagen fibrils as they can change the fibrillar behavior in various ways. Advanced-Glycation Endproducts (AGEs), one particular type of cross-links, have been shown to accumulate and…

Tissues and Organs · Quantitative Biology 2023-01-31 Julia Kamml , Chun-Yu Ke , Claire Acevedo , David Kammer

Cellular membranes are elastic lipid bilayers that contain a variety of proteins, including ion channels, receptors, and scaffolding proteins. These proteins are known to diffuse in the plane of the membrane and to influence the bending of…

Soft Condensed Matter · Physics 2020-10-28 Arijit Mahapatra , David Saintillan , Padmini Rangamani

Caffeine (1,3,7-trimethylxanthine), an ingredient of coffee, is used worldwide as a psychostimulant, antioxidant, and adjuvant analgesic. To gain insights into the action mechanism of caffeine, we report on its effects on the phase…

Soft Condensed Matter · Physics 2020-12-02 V. K. Sharma , H. Srinivasan , V. García Sakai , S. Mitra

Phagocytosis is the process of engulfment and internalization of comparatively large particles by the cell, that plays a central role in the functioning of our immune system. We study the process of phagocytosis by considering a simplified…

Soft Condensed Matter · Physics 2022-01-05 Raj Kumar Sadhu , Sarah R Barger , Samo Penič , Aleš Iglič , Mira Krendel , Nils C Gauthier , Nir S Gov

We propose a new model for the emergence of blood capillary networks. We assimilate the tissue and extra cellular matrix as a porous medium, using Darcy's law for describing both blood and intersticial fluid flows. Oxygen obeys a…

Cell Behavior · Quantitative Biology 2018-12-27 P. Aceves-Sanchez , B. Aymard , D. Peurichard , P. Kennel , A. Lorsignol , F. Plouraboue , L. Casteilla , P. Degond

The spatio-temporal organization of proteins and the associated morphological changes in membranes are of importance in cell signaling. Several mechanisms that promote the aggregation of proteins at low cell surface concentrations have been…

Biological Physics · Physics 2018-04-18 K. K. Sreeja , P. B. Sunil Kumar

The geometry of the blood vessel wall plays a regulatory role on the motion of red blood cells (RBCs). The overall topography of the vessel wall depends on many features, among which the endothelial lining of the endothelial surface layer…

Quantitative Methods · Quantitative Biology 2023-08-09 Ying Zhang , Thomas G. Fai
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