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Compound graphs are networks in which vertices can be grouped into larger subsets, with these subsets capable of further grouping, resulting in a nesting that can be many levels deep. In several applications, including biological workflows,…
We unify several seemingly different graph and digraph classes under one umbrella. These classes are all broadly speaking different generalizations of interval graphs, and include, in addition to interval graphs, also adjusted interval…
Let $G$ be a group. The directed endomorphism graph, \dend of $G$ is a directed graph with vertex set $G$ and there is a directed edge from the vertex `$a$' to the vertex `$\, b$' $(a \neq b) $ if and only if there exists an endomorphism on…
A geometric graph is a simple graph G together with a straight line drawing of G in the plane with the vertices in general position. Two geometric realizations of a simple graph are geo-isomorphic if there is a vertex bijection between them…
A graph is an opposition graph, respectively, a coalition graph, if it admits an acyclic orientation which puts the two end-edges of every chordless 4-vertex path in opposition, respectively, in the same direction. Opposition and coalition…
Bayesian network is a frequently-used method for fault detection and diagnosis in industrial processes. The basis of Bayesian network is structure learning which learns a directed acyclic graph (DAG) from data. However, the search space…
Isoradial graphs are a natural generalization of regular graphs which give, for many models of statistical mechanics, the right framework for studying models at criticality. In this survey paper, we first explain how isoradial graphs…
An ordered graph is a graph enhanced with a linear order on the vertex set. An ordered graph is a core if it does not have an order-preserving homomorphism to a proper subgraph. We say that $H$ is the core of $G$ if (i) $H$ is a core, (ii)…
Graphical Markov models determined by acyclic digraphs (ADGs), also called directed acyclic graphs (DAGs), are widely studied in statistics, computer science (as Bayesian networks), operations research (as influence diagrams), and many…
Directed Acyclic Graphical (DAG) models efficiently formulate causal relationships in complex systems. Traditional DAGs assume nodes to be scalar variables, characterizing complex systems under a facile and oversimplified form. This paper…
An ordinary voltage graph embedding of a graph in a surface encodes a certain kind of highly symmetric covering space of that surface. Given an ordinary voltage graph embedding of a graph $G$ in a surface with voltage group $A$ and a…
Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…
Directed acyclic graphical (DAG) models are a powerful tool for representing causal relationships among jointly distributed random variables, especially concerning data from across different experimental settings. However, it is not always…
Partially ordered sets labeled with k labels (k-posets) and their homomorphisms are examined. We give a representation of directed graphs by k-posets; this provides a new proof of the universality of the homomorphism order of k-posets. This…
An intersection digraph is a digraph where every vertex $v$ is represented by an ordered pair $(S_v, T_v)$ of sets such that there is an edge from $v$ to $w$ if and only if $S_v$ and $T_w$ intersect. An intersection digraph is reflexive if…
A normally regular digraph with parameters $(v,k,\lambda,\mu)$ is a directed graph on $v$ vertices whose adjacency matrix $A$ satisfies the equation $AA^t=k I+\lambda (A+A^t)+\mu(J-I-A-A^t)$. This means that every vertex has out-degree $k$,…
Weakly distance-regular digraphs are a natural directed version of distance-regular graphs. In [16], we classified all commutative weakly distance-regular digraphs whose underlying graphs are Hamming graphs, folded n-cubes, or Doob graphs.…
We construct and study a class of algebras associated to generalized layered graphs, i.e. directed graphs with a ranking function on their vertices. Each finite directed acyclic graph admits countably many structures of a generalized…
Directed acyclic graphs (DAGs) constitute a central modeling tool to enable principled reasoning about cause-effect interactions in complex systems. However, since the causal structure underlying a group of variables is often unknown and…
Comparability graphs are graphs which have transitive orientations. The dimension of a poset is the least number of linear orders whose intersection gives this poset. The dimension ${\rm dim}(X)$ of a comparability graph $X$ is the…