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We present a novel Monte Carlo simulation of protein folding, in which all heavy atoms are represented as interacting hard spheres. This model includes all degrees of freedom relevant to folding - all sidechain and backbone torsions - and…

Soft Condensed Matter · Physics 2007-05-23 J. Shimada , E. L. Kussell , E. I. Shakhnovich

We develop a parallel rejection algorithm to tackle the problem of low acceptance in Monte Carlo methods, and apply it to the simulation of the hopping conduction in Coulomb glasses using Graphics Processing Units, for which we also…

Disordered Systems and Neural Networks · Physics 2014-08-19 Ezequiel E. Ferrero , Alejandro B. Kolton , Matteo Palassini

A coarse-grained multi-blob description of polymer solutions is presented, based on soft, transferable effective interactions between bonded and non-bonded blobs. The number of blobs is chosen such that the blob density does not exceed…

Soft Condensed Matter · Physics 2009-11-13 Carlo Pierleoni , Barbara Capone , Jean-Pierre Hansen

Topological states may be protected by a lattice symmetry in a class of topological semi-metals. In three spatial dimensions, the Berry flux around gapless excitations in momentum space defines a chirality concretely, so a protecting…

Strongly Correlated Electrons · Physics 2018-06-13 SangEun Han , Eun-Gook Moon

Thermodynamic properties of the one-dimensional Kondo lattice model at half-filling are studied by the density matrix renormalization group method applied to the quantum transfer matrix. Spin susceptibility, charge susceptibility, and…

Strongly Correlated Electrons · Physics 2007-05-23 N. Shibata , B. Ammon , M. Troyer , M. Sigrist , K. Ueda

Finite systems in confining potentials are known to undergo structural transitions similar to phase transitions. However, these systems are inhomogeneous, and their "melting" point may depend on the position in the trap and vary with the…

Plasma Physics · Physics 2015-04-29 H. Thomsen , M. Bonitz

Control of the Coulomb interaction between single electrons is vital for realizing quantum information processing using flying electrons and, particularly, for the realization of deterministic two-qubit operations. Since the strength of the…

Mesoscale and Nanoscale Physics · Physics 2023-10-20 Gento Yamahata , Nathan Johnson , Akira Fujiwara

We perform numerical simulations of an active fully flexible self-avoiding polymer as a function of the quality of the embedding solvent described in terms of an effective monomer-monomer interaction. Specifically, by extracting the Flory…

Soft Condensed Matter · Physics 2020-10-19 S. Das , N. Kennedy , A. Cacciuto

This article presents computationally efficient algorithms for modeling two special cases of rigid contact---contact with only viscous friction and contact without slip---that have particularly useful applications in robotic locomotion and…

Robotics · Computer Science 2015-04-06 Evan Drumwright

In this paper we review some recent results on nonlocal interaction problems. The focus is on interaction kernels that are anisotropic variants of the classical Coulomb kernel. In other words, while preserving the same singularity at zero…

Analysis of PDEs · Mathematics 2026-01-14 Maria Giovanna Mora

CrSBr is a layered van der Waals insulator with a quasi one-dimensional electronic structure and in-plane ferromagnetic order. Recent experimental work on Li-doped CrSBr reveals quasi-1D charge modulated states. In this study, we develop ab…

Materials Science · Physics 2025-06-26 Zhi-Hao Cui , Andrew J. Millis , David R. Reichman

We study a model of phantom tethered membranes, embedded in three-dimensional space, by extensive Monte Carlo simulations. The membranes have hexagonal lattice structure where each monomer is interacting with six nearest-neighbors (NN).…

Statistical Mechanics · Physics 2009-11-07 J-P. Kownacki , H. T. Diep

The Coulomb phase of spin ice, and indeed the Ic phase of water ice, naturally realise a fully-packed two-colour loop model in three dimensions. We present a detailed analysis of the statistics of these loops, which avoid themselves and…

Statistical Mechanics · Physics 2011-11-09 L. D. C. Jaubert , M. Haque , R. Moessner

We report on Hybrid-Monte-Carlo simulations of the tight-binding model with long-range Coulomb interactions for the electronic properties of graphene. We investigate the spontaneous breaking of sublattice symmetry corresponding to a…

High Energy Physics - Lattice · Physics 2014-05-28 Dominik Smith , Lorenz von Smekal

Searching for triplet superconductivity has been pursued intensively in a broad field of material science and quantum information for decades. Nevertheless, these novel states remain rare. Within a simplified effective three-orbital model,…

Superconductivity · Physics 2022-10-31 Jingyao Wang , Xiao Zhang , Runyu Ma , Guang Yang , Eduardo V. Castro , Tianxing Ma

We present an exact numerical study of the scaling of density and momentum distribution functions of harmonically trapped one-dimensional bosons with repulsive contact interactions at zero and finite temperatures. We use path integral…

Quantum Gases · Physics 2016-09-05 Wei Xu , Marcos Rigol

We have studied the resistivity, $\rho$, of a two-dimensional electron system in silicon in the temperature range 200 mK < T < 7.5 K at zero magnetic field at low electron densities, when the electron system is in the insulating regime. Our…

Condensed Matter · Physics 2009-10-28 Whitney Mason , S. V. Kravchenko , G. E. Bowker , J. E. Furneaux

Low field and high field transport properties of carbon nanotubes/polymer composites are investigated for different tube fractions. Above the percolation threshold f_c=0.33%, transport is due to hopping of localized charge carriers with a…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 J. M. Benoit , B. Corraze , O. Chauvet

We study interaction corrections to the thermoelectric transport coefficient $\alpha$ and the thermopower $S$ in the two-dimensional disordered electron gas with long-range Coulomb interactions. To this end, we analyze the heat…

Mesoscale and Nanoscale Physics · Physics 2024-11-05 Zahidul Islam Jitu , Georg Schwiete

Coulomb drag experiments can give us information about the interaction state of double-layer systems. Here, we demonstrate anomalous Coulomb drag behaviours in a two-dimensional electron-electron bilayer system constructed by stacking…

Mesoscale and Nanoscale Physics · Physics 2023-02-15 Meizhen Huang , Zefei Wu , Ning Wang , Siu-Tat Chui