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Related papers: Worst-Case Optimal Adaptive Prefix Coding

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We present a data structure that stores a sequence $s[1..n]$ over alphabet $[1..\sigma]$ in $n\Ho(s) + o(n)(\Ho(s){+}1)$ bits, where $\Ho(s)$ is the zero-order entropy of $s$. This structure supports the queries \access, \rank\ and \select,…

Data Structures and Algorithms · Computer Science 2012-04-03 Jeremy Barbay , Francisco Claude , Travis Gagie , Gonzalo Navarro , Yakov Nekrich

We show that the compressed suffix array and the compressed suffix tree of a string $T$ can be built in $O(n)$ deterministic time using $O(n\log\sigma)$ bits of space, where $n$ is the string length and $\sigma$ is the alphabet size.…

Data Structures and Algorithms · Computer Science 2016-11-15 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

We describe the first self-indexes able to count and locate pattern occurrences in optimal time within a space bounded by the size of the most popular dictionary compressors. To achieve this result we combine several recent findings,…

Data Structures and Algorithms · Computer Science 2019-09-06 Anders Roy Christiansen , Mikko Berggren Ettienne , Tomasz Kociumaka , Gonzalo Navarro , Nicola Prezza

It is widely assumed that $O(m+\lg \sigma)$ is the best one can do for finding a pattern of length $m$ in a compacted trie storing strings over an alphabet of size $\sigma$, if one insists on linear-size data structures and deterministic…

Data Structures and Algorithms · Computer Science 2013-02-15 Johannes Fischer , Pawel Gawrychowski

In pliable index coding, we consider a server with $m$ messages and $n$ clients where each client has as side information a subset of the messages. We seek to minimize the number of broadcast transmissions, so that each client can recover…

Information Theory · Computer Science 2017-08-11 Linqi Song , Christina Fragouli

The random access problem for compressed strings is to build a data structure that efficiently supports accessing the character in position $i$ of a string given in compressed form. Given a grammar of size $n$ compressing a string of size…

Data Structures and Algorithms · Computer Science 2015-01-27 Patrick Hagge Cording

Encoding data structures store enough information to answer the queries they are meant to support but not enough to recover their underlying datasets. In this paper we give the first encoding data structure for the challenging problem of…

Data Structures and Algorithms · Computer Science 2017-02-21 Travis Gagie , Giovanni Manzini , Rossano Venturini

We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…

Data Structures and Algorithms · Computer Science 2019-09-23 Philip Bille , Inge Li Gørtz , Paweł Gawrychowski , Gad M. Landau , Oren Weimann

The suffix array and the suffix tree are the two most fundamental data structures for string processing. For a length-$n$ text, however, they use $\Theta(n \log n)$ bits of space, which is often too costly. To address this, Grossi and…

Data Structures and Algorithms · Computer Science 2023-04-20 Dominik Kempa , Tomasz Kociumaka

Adaptive variable-length codes associate a variable-length codeword to the symbol being encoded depending on the previous symbols in the input string. This class of codes has been recently presented in [Dragos Trinca, arXiv:cs.DS/0505007]…

Data Structures and Algorithms · Computer Science 2007-05-23 Dragos Trinca

Cuckoo hashing is a highly practical dynamic dictionary: it provides amortized constant insertion time, worst case constant deletion time and lookup time, and good memory utilization. However, with a noticeable probability during the…

Data Structures and Algorithms · Computer Science 2009-03-04 Yuriy Arbitman , Moni Naor , Gil Segev

In the problem of adaptive compressed sensing, one wants to estimate an approximately $k$-sparse vector $x\in\mathbb{R}^n$ from $m$ linear measurements $A_1 x, A_2 x,\ldots, A_m x$, where $A_i$ can be chosen based on the outcomes $A_1…

Data Structures and Algorithms · Computer Science 2018-04-26 Vasileios Nakos , Xiaofei Shi , David P. Woodruff , Hongyang Zhang

Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string…

Data Structures and Algorithms · Computer Science 2016-12-07 Philip Bille , Inge Li Gørtz , Frederik Rye Skjoldjensen

Suppose that we are given a string $s$ of length $n$ over an alphabet $\{0,1,\ldots,n^{O(1)}\}$ and $\delta$ is the string complexity of $s$, a known compression measure. We describe an index on $s$ with $O(\delta\log\frac{n}{\delta})$…

Data Structures and Algorithms · Computer Science 2026-04-15 Dmitry Kosolobov

There is a large literature devoted to the problem of finding an optimal (min-cost) prefix-free code with an unequal letter-cost encoding alphabet of size. While there is no known polynomial time algorithm for solving it optimally there are…

Information Theory · Computer Science 2007-07-13 Mordecai Golin , Li Jian

We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…

Data Structures and Algorithms · Computer Science 2020-12-09 Dominik Kempa

In this work, we study the limits of compressed data structures, i.e., structures that support various queries on an input text $T\in\Sigma^n$ using space proportional to the size of $T$ in compressed form. Nearly all fundamental queries…

Data Structures and Algorithms · Computer Science 2025-10-23 Dominik Kempa , Tomasz Kociumaka

Let $s$ be a string of length $n$ over an alphabet of constant size $\sigma$ and let $c$ and $\epsilon$ be constants with (1 \geq c \geq 0) and (\epsilon > 0). Using (O (n)) time, (O (n^c)) bits of memory and one pass we can always encode…

Information Theory · Computer Science 2007-08-15 Travis Gagie

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

Data Structures and Algorithms · Computer Science 2016-08-03 Paweł Gawrychowski , Tomasz Kociumaka

We give a fully dynamic algorithm maintaining a $(1-\varepsilon)$-approximate directed densest subgraph in $\tilde{O}(\log^3(n)/\varepsilon^6)$ amortized time or $\tilde{O}(\log^4(n)/\varepsilon^7)$ worst-case time per edge update (where…

Data Structures and Algorithms · Computer Science 2023-12-19 Richard Li , Kent Quanrud