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We present a method for producing documentary-style content using real-time scientific visualization. We produce molecumentaries, i.e., molecular documentaries featuring structural models from molecular biology. We employ scalable methods…

Human-Computer Interaction · Computer Science 2024-04-25 David Kouřil , Ondřej Strnad , Peter Mindek , Sarkis Halladjian , Tobias Isenberg , M. Eduard Gröller , Ivan Viola

In this paper, we present an analytical model for the diffusive molecular communication (MC) system with a reversible adsorption receiver in a fluid environment. The widely used concentration shift keying (CSK) is considered for modulation.…

Emerging Technologies · Computer Science 2016-06-23 Yansha Deng , Adam Noel , Maged Elkashlan , Arumugam Nallanathan , Karen C. Cheung

Molecular communication (MC) offers a groundbreaking approach to communication inspired by biological signaling. It is particularly suited for environments where traditional electromagnetic methods fail, such as fluid mediums or within the…

Molecular Networks · Quantitative Biology 2025-03-18 Aravind Muraleedharan , Abhishek K. Gupta

The random propagation of molecules in a fluid medium is characterized by the spontaneous diffusion law as well as the interaction between the environment and molecules. In this paper, we embody the anomalous diffusion theory for modeling…

Information Theory · Computer Science 2019-11-05 Dung Phuong Trinh , Youngmin Jeong , Hyundong Shin , Moe Z. Win

Vocalizations and less often gestures have been the object of linguistic research over decades. However, the development of a general theory of communication with human language as a particular case requires a clear understanding of the…

Neurons and Cognition · Quantitative Biology 2016-10-25 Antoni Hernández-Fernández , Ramon Ferrer-i-Cancho

This series presents an approach to mathematical biology which makes precise the function of biological molecules. Because biological systems compute, the theory is a general purpose computer language. I build a language for efficiently…

Molecular Networks · Quantitative Biology 2007-05-23 Ron Maimon

Biological functions in each animal cell depend on coordinated operations of a wide variety of molecular motors. Some of the these motors transport cargo to their respective destinations whereas some others are mobile workshops which…

Biological Physics · Physics 2008-03-07 Debashish Chowdhury

Molecular communication often involves coexisting links where certain links may have priority over others. In this work, we consider a system in three-dimensional (3-D) space with two coexisting communication links, each between a point…

Information Theory · Computer Science 2021-02-12 Nithin V. Sabu , Neeraj Varshney , Abhishek K. Gupta

We propose communication pattern logic. A communication pattern describes how processes or agents inform each other, independently of the information content. The full-information protocol in distributed computing is the special case…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-02 Armando Castañeda , Hans van Ditmarsch , David A. Rosenblueth , Diego A. Velázquez

Information delivery using chemical molecules is an integral part of biology at multiple distance scales and has attracted recent interest in bioengineering and communication. The collective signal strength at the receiver (i.e., the…

Information Theory · Computer Science 2016-08-04 Yansha Deng , Adam Noel , Weisi Guo , Arumugam Nallanathan , Maged Elkashlan

Molecular Communications (MC) is a bio-inspired communication technique that uses molecules to encode and transfer information. Many efforts have been devoted to developing novel modulation techniques for MC based on various distinguishable…

Emerging Technologies · Computer Science 2023-02-22 M. Okan Araz , Ahmet R. Emirdagi , M. Serkan Kopuzlu , Murat Kuscu

This paper describes a design of a molecular propagation system in molecular communication. Molecular communication is a new communication paradigm where biological and artificially-created nanomachines communicate over a short distance…

Biological Physics · Physics 2007-08-15 Satoshi Hiyama , Y. Isogawa , T. Suda , Y. Moritani , Kazuo Sutoh

Diffusive molecular communication (DMC) is one of the most promising approaches for realizing nano-scale communications in biological environments for healthcare applications. In this paper, a DMC system in biological cylindrical…

Information Theory · Computer Science 2018-11-27 Mohammad Zoofaghari , Hamidreza Arjmandi

A system of two closely spaced atoms interacting through a vacuum electromagnetic field is considered. It is demonstrated that radiative decay in such a system resulting from photon exchange gives rise to a definite amount of information…

Quantum Physics · Physics 2007-05-23 Boris Grishanin , Victor Zadkov

Computational simulations are a popular method for testing hypotheses about the emergence of communication. This kind of research is performed in a variety of traditions including language evolution, developmental psychology, cognitive…

Artificial Intelligence · Computer Science 2023-03-09 Julian Zubek , Tomasz Korbak , Joanna Rączaszek-Leonardi

Interactive communication (IC), i.e., the reciprocal exchange of information between two or more interactive partners, is a fundamental part of human nature. As such, it has been studied across multiple scientific disciplines with different…

Chemical reactions are a prominent feature of molecular communication (MC) systems, with no direct parallels in wireless communications. While chemical reactions may be used inside the transmitter nodes, receiver nodes or the communication…

Information Theory · Computer Science 2018-04-25 Maryam Farahnak-Ghazani , Gholamali Aminian , Mahtab Mirmohseni , Amin Gohari , Masoumeh Nasiri-Kenari

This work presents a performance analysis for diffusive molecular communication with mobile transmit and receive nanomachines. To begin with, the optimal test is obtained for symbol detection at the receiver nanomachine. Subsequently,…

Information Theory · Computer Science 2017-10-04 Neeraj Varshney , Aditya K. Jagannatham , Pramod K. Varshney

When addressing spatial biological questions using mathematical models, symmetries within the system are often exploited to simplify the problem by reducing its physical dimension. In a reduced-dimension model molecular movement is…

Quantitative Methods · Quantitative Biology 2025-02-17 Natasha S. Savage

Quantum communication holds a promise for absolutely secure transmission of secret messages and faithful transfer of unknown quantum states. Photonic channels appear to be very attractive for physical implementation of quantum…

Quantum Physics · Physics 2009-11-07 Lu-Ming Duan , Mikhail Lukin , Ignacio Cirac , Peter Zoller