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Much of the information the brain processes and stores is temporal in nature - a spoken word or a handwritten signature, for example, is defined by how it unfolds in time. However, it remains unclear how neural circuits encode complex…

Neurons and Cognition · Quantitative Biology 2017-08-15 Vishwa Goudar , Dean Buonomano

Activity in coupled systems is often oscillatory, for example, the firing pattern of neuronal populations. Whereas these oscillations have been studied predominantly in local circuits, here we show how the topology of large-scale networks,…

Neurons and Cognition · Quantitative Biology 2014-05-15 Marcus Kaiser

The nervous system encodes continuous information from the environment in the form of discrete spikes, and then decodes these to produce smooth motor actions. Understanding how spikes integrate, represent, and process information to produce…

Neural and Evolutionary Computing · Computer Science 2017-11-15 Madhavun Candadai Vasu , Eduardo Izquierdo

Recently discovered constituents of the brain waves -- the oscillons -- provide high-resolution representation of the extracellular field dynamics. Here we study the most robust, highest-amplitude oscillons that manifest in actively…

Neurons and Cognition · Quantitative Biology 2024-04-23 M. S. Zobaer , N. Lotfi , C. M. Domenico , C. Hoffman , L. Perotti , D. Ji , Y. Dabaghian

Compared to conventional artificial neurons that produce dense and real-valued responses, biologically-inspired spiking neurons transmit sparse and binary information, which can also lead to energy-efficient implementations. Recent research…

Computation and Language · Computer Science 2023-02-17 Alexandre Bittar , Philip N. Garner

Recurrent neural networks are powerful tools for understanding and modeling computation and representation by populations of neurons. Continuous-variable or "rate" model networks have been analyzed and applied extensively for these…

Neurons and Cognition · Quantitative Biology 2016-01-29 Brian DePasquale , Mark M. Churchland , L. F. Abbott

A common approach to interpreting spiking activity is based on identifying the firing fields---regions in physical or configuration spaces that elicit responses of neurons. Common examples include hippocampal place cells that fire at…

Neurons and Cognition · Quantitative Biology 2021-08-10 D. Akhtiamov , A. G. Cohn , Y. Dabaghian

Optical imaging of genetically encoded calcium indicators is a powerful tool to record the activity of a large number of neurons simultaneously over a long period of time from freely behaving animals. However, determining the exact time at…

Applications · Statistics 2021-03-08 Tong Shen , Kevin Johnston , Gyorgy Lur , Michele Guindani , Hernando Ombao , Zhaoxia Yu

Sensory neurons are often described in terms of a receptive field, that is, a linear kernel through which stimuli are filtered before they are further processed. If information transmission is assumed to proceed in a feedforward cascade,…

Neurons and Cognition · Quantitative Biology 2015-03-11 Eugenio Urdapilleta , Inés Samengo

Persistent activity is postulated to drive neural network plasticity and learning. To investigate its underlying cellular mechanisms, we developed a biophysically tractable model that explains the emergence, sustenance, and eventual…

Neurons and Cognition · Quantitative Biology 2009-11-13 Vladislav Volman , Richard Gerkin , Pak-Ming Lau , Eshel Ben-Jacob , Guo-Qiang Bi

Spiking activity of neurons engaged in learning and performing a task show complex spatiotemporal dynamics. While the output of recurrent network models can learn to perform various tasks, the possible range of recurrent dynamics that…

Neurons and Cognition · Quantitative Biology 2018-08-21 Christopher Kim , Carson Chow

Modeling the neuronal processes underlying short-term working memory remains the focus of many theoretical studies in neuroscience. Here we propose a mathematical model of spiking neuron network (SNN) demonstrating how a piece of…

Neurons and Cognition · Quantitative Biology 2021-09-01 Yuliya Tsybina , Innokentiy Kastalskiy , Mikhail Krivonosov , Alexey Zaikin , Victor Kazantsev , Alexander Gorban , Susanna Gordleeva

The seemingly stochastic transient dynamics of neocortical circuits observed in vivo have been hypothesized to represent a signature of ongoing stochastic inference. In vitro neurons, on the other hand, exhibit a highly deterministic…

Neurons and Cognition · Quantitative Biology 2017-03-14 Mihai A. Petrovici , Johannes Bill , Ilja Bytschok , Johannes Schemmel , Karlheinz Meier

Thalamus has traditionally been considered as only a relay source of cortical inputs, with hierarchically organized cortical circuits serially transforming thalamic signals to cognitively-relevant representations. Given the absence of local…

Neurons and Cognition · Quantitative Biology 2018-10-18 Nima Dehghani , Ralf D. Wimmer

The spiking activity of the hippocampal place cells plays a key role in producing and sustaining an internalized representation of the ambient space---a cognitive map. These cells do not only exhibit location-specific spiking during…

Neurons and Cognition · Quantitative Biology 2018-11-05 Andrey Babichev , Dmitriy Morozov , Yuri Dabaghian

We consider a model of basic inner retinal connectivity where bipolar and amacrine cells interconnect, and both cell types project onto ganglion cells, modulating their response output to the brain visual areas. We derive an analytical…

Neurons and Cognition · Quantitative Biology 2024-01-10 Evgenia Kartsaki , Gerrit Hilgen , Evelyne Sernagor , Bruno Cessac

Neuronal oscillations are closely related to the symptoms of Parkinson's disease (PD). In this study, we explore how random fluctuations (or "stochastic inputs") affect these oscillations in brain states, which reflect the collective…

Neurons and Cognition · Quantitative Biology 2025-02-24 Thoa Thieu , Roderick Melnik

The action potential constitutes the digital component of the signaling dynamics of neurons. But the biophysical nature of the full-time course of the action potential associated with changes in membrane potential is mathematically distinct…

Neurons and Cognition · Quantitative Biology 2026-04-16 Gabriel A. Silva

The structure of a genetic network is uncovered by studying its response to external stimuli (input signals). We present a theory of propagation of an input signal through a linear stochastic genetic network. It is found that there are…

Molecular Networks · Quantitative Biology 2009-11-11 Ovidiu Lipan , Wing H. Wong

Two-photon imaging of calcium indicators allows simultaneous recording of responses of hundreds of neurons over hours and even days, but provides a relatively indirect measure of their spiking activity. Existing deconvolution algorithms…

Neurons and Cognition · Quantitative Biology 2016-01-05 Elad Ganmor , Michael Krumin , Luigi F. Rossi , Matteo Carandini , Eero P. Simoncelli
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