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By using the point model of reaction kinetics we have studied the stochastic properties of the lifetime of small systems controlled by autocatalytic reaction A+X -> X+X -> A+X, X -> B. Assuming that a system is living only when the number…

Statistical Mechanics · Physics 2007-05-23 L. Pal

Mutation is introduced into autocatalytic reaction networks. Examples of low dimensional dynamical systems --- n = 2, 3 and 4 --- are discussed and complete qualitative analysis is presented. Error thresholds known from simple…

The quantitative convergence to equilibrium for reaction-diffusion systems arising from complex balanced chemical reaction networks with mass action kinetics is studied by using the so-called entropy method. In the first part of the paper,…

Analysis of PDEs · Mathematics 2016-11-11 Laurent Desvillettes , Klemens Fellner , Bao Quoc Tang

Background: Autocatalytic sets are often considered a necessary (but not sufficient) condition for the origin and early evolution of life. Although the idea of autocatalytic sets was already conceived of many years ago, only recently have…

Molecular Networks · Quantitative Biology 2012-06-06 Wim Hordijk , Mike Steel

We investigate quantum reaction-diffusion systems in one-dimension with bosonic particles that coherently hop in a lattice, and when brought in range react dissipatively. Such reactions involve binary annihilation ($A + A \to \emptyset$)…

Statistical Mechanics · Physics 2024-05-20 Shiphrah Rowlands , Igor Lesanovsky , Gabriele Perfetto

The evolution of a system of chemical reactions can be studied, in the eikonal approximation, by means of a Hamiltonian dynamical system. The fixed points of this dynamical system represent the different states in which the chemical system…

Statistical Mechanics · Physics 2009-11-13 Carlos Escudero , Jose Angel Rodriguez

An autocatalytic reacting system with particles interacting at a finite distance is studied. We investigate the effects of the discrete-particle character of the model on properties like reaction rate, quenching phenomenon and front…

Statistical Mechanics · Physics 2009-11-13 Stefano Berti , Cristobal Lopez , Davide Vergni , Angelo Vulpiani

We study reaction-diffusion processes with concentration-dependent diffusivity. First, we determine the decay of the concentration in the single-species and two-species diffusion-controlled annihilation processes. We then consider two…

Statistical Mechanics · Physics 2013-05-30 P. L. Krapivsky

A system of two cubic reaction-diffusion equations for two independent gene frequencies arising in population dynamics is studied. Depending on values of coefficients, all possible Lie and $Q$-conditional (nonclassical) symmetries are…

Exactly Solvable and Integrable Systems · Physics 2026-03-27 Philip Broadbridge , Roman Cherniha , Vasyl' Davydovych , Ian Marquette

We examine the long-time behaviour of A+B \to 0 reaction-diffusion systems with initially separated species A and B. All of our analysis is carried out for arbitrary (positive) values of the diffusion constant D_A of particles A and initial…

Statistical Mechanics · Physics 2015-06-25 Zbigniew Koza

In the rapidly emerging field of nanotechnology, as well as in biology where chemical reaction phenomena take place in systems with characteristic length scales ranging from micrometer to the nanometer range, understanding of chemical…

Statistical Mechanics · Physics 2007-05-23 Z. Konkoli , A. Karlsson , O. Orwar

We investigate the evolution of particle ensembles in open chaotic hydrodynamical flows. Active processes of the type A+B --> 2B and A+B --> 2C are considered in the limit of weak diffusion. As an illustrative advection dynamics we consider…

chao-dyn · Physics 2009-10-31 Gy. Karolyi , A. Pentek , Z. Toroczkai , T. Tel , C. Grebogi

We study reaction-diffusion processes with multi-species of particles and hard-core interaction. We add boundary driving to the system by means of external reservoirs which inject and remove particles, thus creating stationary currents. We…

Mathematical Physics · Physics 2023-08-16 Francesco Casini , Cristian Giardina , Cecilia Vernia

Given any finite and closed chemical reaction system, it is possible to efficiently determine whether or not it contains a `self-sustaining and collectively autocatalytic' subset of reactions, and to find such subsets when they exist.…

Molecular Networks · Quantitative Biology 2015-01-26 Mike Steel

Evolution of a system of diffusing and proliferating mortal reactants is analyzed in the presence of randomly moving catalysts. While the continuum description of the problem predicts reactant extinction as the average growth rate becomes…

Soft Condensed Matter · Physics 2009-10-31 N. M. Shnerb , E. Bettelheim , Y. Louzoun , O. Agam , S. Solomon

We consider a diffusion-limited reaction in case the reacting entities are not available simultaneously. Due to the fact that the reaction takes place after a spatiotemporal accumulation of reactants, the underlying rate equation has to be…

Statistical Mechanics · Physics 2007-05-23 Steffen Trimper , Knud Zabrocki , Michael Schulz

We study a non-conserved one-dimensional stochastic process which involves two species of particles $A$ and $B$. The particles diffuse asymmetrically and react in pairs as $A\emptyset\leftrightarrow AA\leftrightarrow BA \leftrightarrow…

Statistical Mechanics · Physics 2013-10-03 Somayeh Zeraati , Farhad H. Jafarpour , Haye Hinrichsen

The family of autonomous reaction-diffusion models on a one-dimensional lattice with boundaries is studied. By autonomous, it is meant that the evolution equation for n-point functions contain only n- or less- point functions. It is shown…

Statistical Mechanics · Physics 2009-10-31 Amir Aghamohammadi , Mohammad Khorrami

We develop an effective numerical method of studying large-time properties of reversible reaction-diffusion systems of type A + B <-> C with initially separated reactants. Using it we find that there are three types of asymptotic reaction…

Statistical Mechanics · Physics 2009-11-10 Zbigniew Koza

We address the two-dimensional bimolecular annihilation reaction $A + A \to \emptyset$ in the presence of random impurities. Impurities with sufficiently long-ranged interaction energies are known to lead to anomalous diffusion, $<r^2(t)>…

Statistical Mechanics · Physics 2009-10-30 Jeong-Man Park , Michael W. Deem