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The aim of this paper is to present a streamlined and fully three-dimensional version of the quasicontinuum (QC) theory of Tadmor et al. and to analyze its accuracy and convergence characteristics. Specifically, we assess the effect of the…

Materials Science · Physics 2009-11-07 J. Knap , M. Ortiz

In this tutorial-style review we discuss basic concepts of coupled cluster theory and recent developments that increase its computational efficiency for calculations of molecules, solids and materials in general. We will touch upon the…

Materials Science · Physics 2020-04-15 Igor Ying Zhang , Andreas Grüneis

In a series of two articles, we propose a comprehensive mathematical framework for Coupled-Cluster-type methods. In this second part, we analyze the nonlinear equations of the single-reference Coupled-Cluster method using topological degree…

Numerical Analysis · Mathematics 2023-03-28 Mihály A. Csirik , Andre Laestadius

One basic requirement of many studies is the necessity of classifying data. Clustering is a proposed method for summarizing networks. Clustering methods can be divided into two categories named model-based approaches and algorithmic…

Machine Learning · Computer Science 2013-02-19 Raheleh Namayandeh , Farzad Didehvar , Zahra Shojaei

It is shown how traditional development of theories of fluids based upon the concept of physical clustering can be adapted to an alternative local clustering definition. The alternative definition can preserve a detailed valence description…

Chemical Physics · Physics 2015-06-26 Lawrence R. Pratt , Randall A. LaViolette

We consider the problem of estimating the measure of subsets in very large networks. A prime tool for this purpose is the Markov Chain Monte Carlo (MCMC) algorithm. This algorithm, while extremely useful in many cases, still often suffers…

Data Structures and Algorithms · Computer Science 2020-09-01 Ahmad Askarian , Rupei Xu , András Faragó

This work considers clustering nodes of a largely incomplete graph. Under the problem setting, only a small amount of queries about the edges can be made, but the entire graph is not observable. This problem finds applications in…

Machine Learning · Computer Science 2021-10-04 Shahana Ibrahim , Xiao Fu

This paper introduces hierarchical quasi-clustering methods, a generalization of hierarchical clustering for asymmetric networks where the output structure preserves the asymmetry of the input data. We show that this output structure is…

Machine Learning · Computer Science 2014-04-21 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

We present a comprehensive error analysis of two prototypical atomistic-to-continuum coupling methods of blending type: the energy-based and the force-based quasicontinuum methods. Our results are valid in two and three dimensions, for…

Numerical Analysis · Mathematics 2014-04-22 Xingjie Helen Li , Christoph Ortner , Alexander V. Shapeev , Brian Van Koten

A novel approach for GW-based calculations of quasiparticle properties for finite systems is presented, in which the screened interaction is obtained directly from a linear response calculation of the density-density correlation function.…

Strongly Correlated Electrons · Physics 2015-05-13 George Pal , Yaroslav Pavlyukh , Hans Christian Schneider , Wolfgang Huebner

Recent years have seen the development of two types of non-local extensions to the single-site dynamical mean field theory. On one hand, cluster approximations, such as the dynamical cluster approximation, recover short-range…

Strongly Correlated Electrons · Physics 2018-03-21 Sergei Iskakov , Hanna Terletska , Emanuel Gull

Clustering points in a vector space or nodes in a graph is a ubiquitous primitive in statistical data analysis, and it is commonly used for exploratory data analysis. In practice, it is often of interest to "refine" or "improve" a given…

Machine Learning · Computer Science 2022-02-03 K. Fountoulakis , M. Liu , D. F. Gleich , M. W. Mahoney

Due to their algorithmic simplicity and high accuracy, force-based model coupling techniques are an exciting development in computational physics. For example, the force-based quasicontinuum approximation is the only known pointwise…

Numerical Analysis · Mathematics 2015-05-13 Matthew Dobson , Mitchell Luskin , Christoph Ortner

We derive a model problem for quasicontinuum approximations that allows a simple, yet insightful, analysis of the optimal-order convergence rate in the continuum limit for both the energy-based quasicontinuum approximation and the…

Numerical Analysis · Mathematics 2010-07-19 Matthew Dobson , Mitchell Luskin

Force-based multiphysics coupling methods have become popular since they provide a simple and efficient coupling mechanism, avoiding the difficulties in formulating and implementing a consistent coupling energy. They are also the only known…

Numerical Analysis · Mathematics 2011-04-12 Mitchell Luskin , Christoph Ortner

Nonlinear model order reduction has opened the door to parameter optimization and uncertainty quantification in complex physics problems governed by nonlinear equations. In particular, the computational cost of solving these equations can…

Numerical Analysis · Mathematics 2023-02-02 Thomas Daniel , Fabien Casenave , Nissrine Akkari , Ali Ketata , David Ryckelynck

How do graph clustering techniques compare with respect to their summarization power? How well can they summarize a million-node graph with a few representative structures? Graph clustering or community detection algorithms can summarize a…

Information Retrieval · Computer Science 2015-11-24 Yike Liu , Neil Shah , Danai Koutra

The one-dimensional contact process is analyzed by a cluster approximation. In this approach, the hierarchy of rate equations for the densities of finite length empty intervals are truncated under the assumption that adjacent intervals are…

Condensed Matter · Physics 2009-10-22 E. Ben-Naim , P. L. Krapivsky

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

We propose the DPSM method, a density-based node clustering approach that automatically determines the number of clusters and can be applied in both data space and graph space. Unlike traditional density-based clustering methods, which…

Machine Learning · Computer Science 2024-11-05 Feiping Nie , Yitao Song , Jingjing Xue , Rong Wang , Xuelong Li
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