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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

The (non-uniform) sparsest cut problem is the following graph-partitioning problem: given a "supply" graph, and demands on pairs of vertices, delete some subset of supply edges to minimize the ratio of the supply edges cut to the total…

Data Structures and Algorithms · Computer Science 2021-06-01 Vincent Cohen-Addad , Anupam Gupta , Philip N. Klein , Jason Li

Reducing the running time of graph algorithms is vital for tackling real-world problems such as shortest paths and matching in large-scale graphs, where path information plays a crucial role. To address this critical challenge, this paper…

Data Structures and Algorithms · Computer Science 2026-04-14 Akshar Chavan , Sanaz Rabinia , Daniel Grosu , Marco Brocanelli

This paper presents a novel meta algorithm, Partition-Merge (PM), which takes existing centralized algorithms for graph computation and makes them distributed and faster. In a nutshell, PM divides the graph into small subgraphs using our…

Data Structures and Algorithms · Computer Science 2013-09-25 Vincent Blondel , Kyomin Jung , Pushmeet Kohli , Devavrat Shah

Cheeger's fundamental inequality states that any edge-weighted graph has a vertex subset $S$ such that its expansion (a.k.a. conductance) is bounded as follows: \[ \phi(S) \defeq \frac{w(S,\bar{S})}{\min \set{w(S), w(\bar{S})}} \leq…

Data Structures and Algorithms · Computer Science 2015-03-19 Anand Louis , Prasad Raghavendra , Prasad Tetali , Santosh Vempala

We present a general framework of designing efficient dynamic approximate algorithms for optimization on undirected graphs. In particular, we develop a technique that, given any problem that admits a certain notion of vertex sparsifiers,…

Data Structures and Algorithms · Computer Science 2020-05-06 Li Chen , Gramoz Goranci , Monika Henzinger , Richard Peng , Thatchaphol Saranurak

A cut sparsifier is a reweighted subgraph that maintains the weights of the cuts of the original graph up to a multiplicative factor of $(1\pm\epsilon)$. This paper considers computing cut sparsifiers of weighted graphs of size $O(n\log…

Data Structures and Algorithms · Computer Science 2022-04-29 Sebastian Forster , Tijn de Vos

This work concerns the analysis and design of distributed first-order optimization algorithms over time-varying graphs. The goal of such algorithms is to optimize a global function that is the average of local functions using only local…

Optimization and Control · Mathematics 2020-02-17 Akhil Sundararajan , Bryan Van Scoy , Laurent Lessard

We propose a novel algorithm for efficiently computing a sparse directed adjacency matrix from a group of time series following a causal graph process. Our solution is scalable for both dense and sparse graphs and automatically selects the…

Machine Learning · Statistics 2019-11-19 Théophile Griveau-Billion , Ben Calderhead

The independent set problem is NP-hard and particularly difficult to solve in large sparse graphs. In this work, we develop an advanced evolutionary algorithm, which incorporates kernelization techniques to compute large independent sets in…

Data Structures and Algorithms · Computer Science 2015-09-03 Sebastian Lamm , Peter Sanders , Christian Schulz , Darren Strash , Renato F. Werneck

Computing high-quality independent sets quickly is an important problem in combinatorial optimization. Several recent algorithms have shown that kernelization techniques can be used to find exact maximum independent sets in medium-sized…

Data Structures and Algorithms · Computer Science 2016-02-05 Jakob Dahlum , Sebastian Lamm , Peter Sanders , Christian Schulz , Darren Strash , Renato F. Werneck

In this paper, we present a contraction-guided adaptive partitioning algorithm for improving interval-valued robust reachable set estimates in a nonlinear feedback loop with a neural network controller and disturbances. Based on an estimate…

Systems and Control · Electrical Eng. & Systems 2024-01-23 Akash Harapanahalli , Saber Jafarpour , Samuel Coogan

This paper presents efficient distributed algorithms for a number of fundamental problems in the area of graph sparsification: We provide the first deterministic distributed algorithm that computes an ultra-sparse spanner in…

Data Structures and Algorithms · Computer Science 2022-09-26 Marcel Bezdrighin , Michael Elkin , Mohsen Ghaffari , Christoph Grunau , Bernhard Haeupler , Saeed Ilchi , Václav Rozhoň

Given an undirected graph $G$ and an error parameter $\epsilon > 0$, the {\em graph sparsification} problem requires sampling edges in $G$ and giving the sampled edges appropriate weights to obtain a sparse graph $G_{\epsilon}$ with the…

Data Structures and Algorithms · Computer Science 2010-05-06 Ramesh Hariharan , Debmalya Panigrahi

In this work we provide a new technique to design fast approximation algorithms for graph problems where the points of the graph lie in a metric space. Specifically, we present a sampling approach for such metric graphs that, using a…

Data Structures and Algorithms · Computer Science 2018-07-26 Hossein Esfandiari , Michael Mitzenmacher

In a breakthrough work, Kawarabayashi and Thorup (J.~ACM'19) gave a near-linear time deterministic algorithm for minimum cut in a simple graph $G = (V,E)$. A key component is finding the $(1+\varepsilon)$-KT partition of $G$, the coarsest…

Data Structures and Algorithms · Computer Science 2021-11-03 Simon Apers , Paweł Gawrychowski , Troy Lee

We study vertex sparsification for preserving cuts. Given a graph $G$ with a subset $|T|=k$ of its vertices called terminals, a \emph{quality-$q$ cut sparsifier} is a graph $G'$ that contains $T$, such that, for any partition $(T_1,T_2)$ of…

Data Structures and Algorithms · Computer Science 2024-10-18 Yu Chen , Zihan Tan

Distributed algorithms are often beset by the straggler effect, where the slowest compute nodes in the system dictate the overall running time. Coding-theoretic techniques have been recently proposed to mitigate stragglers via algorithmic…

Machine Learning · Statistics 2017-11-21 Zachary Charles , Dimitris Papailiopoulos , Jordan Ellenberg

The problem of learning a directed acyclic graph (DAG) up to Markov equivalence is equivalent to the problem of finding a permutation of the variables that induces the sparsest graph. Without additional assumptions, this task is known to be…

Methodology · Statistics 2020-11-10 Chandler Squires , Joshua Amaniampong , Caroline Uhler

We study the problem of sketching an input graph, so that given the sketch, one can estimate the weight of any cut in the graph within factor $1+\epsilon$. We present lower and upper bounds on the size of a randomized sketch, focusing on…

Data Structures and Algorithms · Computer Science 2014-11-11 Alexandr Andoni , Robert Krauthgamer , David P. Woodruff
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