English
Related papers

Related papers: Intronic Alus Influence Alternative Splicing

200 papers

The physical property characterization of Al doped Mg1-xAlxB2 system with x = 0.0 to 0.50 is reported. The results related to phase formation, structural transition, resistivity R(T) and magnetization M(T) measurements are discussed in…

Superconductivity · Physics 2012-01-24 Monika Mudgel , V. P. S. Awana , H. Kishan , G. L. Bhalla

We develop a simple model to study the effects of an applied force on the melting of a double stranded DNA (dsDNA). Using this model, we could study the stretching, unzipping, rupture and slippage like transition in a dsDNA. We show that in…

Soft Condensed Matter · Physics 2015-05-14 Amit Raj Singh , D. Giri , S. Kumar

Surface enhanced Raman scattering (SERS) process results in a tremendous increase of Raman scattering cross section of molecules adsorbed to plasmonic metals and influenced by numerous physico-chemical factors such as geometry and optical…

Chemical Physics · Physics 2021-02-23 Shimon Rubin , Phuong H. L. Nguyen , Yeshaiahu Fainman

The interface between two-dimensional semiconductors and metal contacts is an important topic of research of nanoelectronic devices based on two-dimensional semiconducting materials such as molybdenum disulfide (MoS2). We report transport…

Mesoscale and Nanoscale Physics · Physics 2017-12-18 Y. Shimazu , K. Arai , T. Iwabuchi

DNA looping participates in transcriptional regulation, for instance, by allowing distal binding sites to act synergistically. Here we study this process and compare different regulatory mechanisms based on repression with and without…

Subcellular Processes · Quantitative Biology 2007-05-23 Jose M. G. Vilar , Stanislas Leibler

Two-dimensional materials (2DMs) have been widely investigated because of their potential for heterogeneous integration with modern electronics. However, several major challenges remain, such as the deposition of high-quality dielectrics on…

Using analytical approach and Monte-Carlo (MC) simulations, we study the elastic behaviour of the intrinsically twisted elastic ribbons with bending anisotropy, such as double-stranded DNA (dsDNA), in two-dimensional (2D) confinement. We…

Soft Condensed Matter · Physics 2017-01-04 H. Salari , B. Eslami-Mossallam , H. F. Ranjbar , M. R. Ejtehadi

Plasmon-induced transparency (PIT) in advanced materials has attracted extensive attention for both theoretical and applied physics. Here, we considered a scheme that can produce PIT and studied the characteristics of ultraslow low-power…

Pattern Formation and Solitons · Physics 2021-08-05 Jiaxi Cheng , Siliu Xu , Shengwang Jiang , Zhiqiang Bo

RNA-Seq technology allows for studying the transcriptional state of the cell at an unprecedented level of detail. Beyond quantification of whole-gene expression, it is now possible to disentangle the abundance of individual alternatively…

Genomics · Quantitative Biology 2012-10-11 Barbara Rakitsch , Christoph Lippert , Hande Topa , Karsten Borgwardt , Antti Honkela , Oliver Stegle

The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq) has provided a very powerful mean to study splicing under multiple conditions at unprecedented depth. However, the complexity of the information to be…

Genomics · Quantitative Biology 2015-08-03 Gael P. Alamancos , Eneritz Agirre , Eduardo Eyras

Heritable differences in gene expression between individuals are an important source of phenotypic variation. The question of how closely the effects of genetic variation on protein levels mirror those on mRNA levels remains open. Here, we…

Genomics · Quantitative Biology 2014-09-04 Frank W. Albert , Dale Muzzey , Jonathan Weissman , Leonid Kruglyak

Although zinc oxide is a promising material for the fabrication of short wavelength optoelectronic devices, p-type doping is a step that remains challenging for the realization of diodes. Out of equilibrium methods such as ion implantation…

Lateral superlattices have attracted major interest as this may allow one to modify spectra of two dimensional electron systems and, ultimately, create materials with tailored electronic properties. Previously, it proved difficult to…

At two-thirds the weight of aluminum, magnesium alloys have the potential to significantly reduce the fuel consumption of transportation vehicles. These advancements depend on our ability to optimize the desirable versus undesirable effects…

Aluminum nanostructures have recently been at the focus of numerous studies due to their properties including oxidation stability and surface plasmon resonances covering the ultraviolet and visible spectral windows. In this article, we…

The topological effects of phonons have been extensively studied in various materials, particularly in the wide-bandgap semiconductor GaN, which has the potential to improve heat dissipation in power electronics due to its intrinsic,…

Materials Science · Physics 2023-10-17 Daosheng Tang

The editing of transcribed RNA by other molecules such that the form of the final product differs from that specified in the corresponding DNA sequence is ubiquitous. This paper uses an abstract, tunable Boolean genetic regulatory network…

Neural and Evolutionary Computing · Computer Science 2015-05-11 Larry Bull

Transcription is a fundamental cellular process, and the first step of gene expression. In human cells, it depends on the binding to chromatin of various proteins, including RNA polymerases and numerous transcription factors (TFs).…

Motivation: Recent studies of genomic-scale regulatory networks suggested that a feed-forward loop (FFL) circuitry is a key component of many such networks. This led to a study of the functional properties of different FFL types, where the…

Molecular Networks · Quantitative Biology 2008-02-26 Yonatan Bilu

Altermagnets are a recently discovered class of magnetic material with great potential for applications in the field of spintronics, owing to their non-relativistic spin-splitting and simultaneous antiferromagnetic order. One of the most…