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Respiration in bacteria involves a sequence of energetically-coupled electron and proton transfers creating an electrochemical gradient of protons (a proton-motive force) across the inner bacterial membrane. With a simple kinetic model we…
Using the strong coupling diagram technique, we study the one-band repulsive Hubbard model on a two-dimensional square lattice in a wide range of chemical potentials $\mu$. Infinite sequences of diagrams describing interactions of electrons…
We discuss continuous observation of the momentum of a single atom by employing the high velocity sensitivity of the index of refraction in a driven $\Lambda$-system based on electromagnetically induced transparency (EIT). In the ideal…
The mechanism and driving forces of chromosome segregation in the bacterial cell cycle of E. coli is one of the least understood events in its life cycle. Using principles of entropic repulsion between polymer loops confined in a cylinder,…
The rapid adhesion of motile bacteria from dilute suspensions poses a fundamental non-equilibrium problem: hydrodynamic interactions bias bacterial motion near surfaces without generating stable confinement, while electrostatic interactions…
A repressilator consists of a loop made up of three repressively interacting genes. We construct a hexagonal lattice with repressilators on each triangle, and use this as a model system for multiple interacting feedback loops. Using…
We develop a classical microscopic model of a dielectric. The model features nonlinear interaction terms between polarizable dipoles and lattice vibrations. The lattice vibrations are found to act as a pseudo-reservoir, giving broadband…
The terminase motors of bacteriophages have been shown to be among the strongest active machines in the biomolecular world, being able to package several tens of kilobase pairs of viral genome into a capsid within minutes. Yet these motors…
An elusive goal in the field of driven quantum matter is the induction of long-range order. Here, we demonstrate a mechanism based on light-induced evaporative cooling of holes in a correlated electron system. Since the entropy of a filled…
We study Bragg spectroscopy of ultra-cold atoms in one-dimensional optical lattices as a method for probing the excitation spectrum in the Mott insulator phase, in particular the one particle-hole excitation band. Within the framework of…
Wave modes induced by cross-phase reshaping of a probe photon in the guiding structure of a periodic train of temporal pulses are investigated theoretically with emphasis on exact solutions to the wave equation for the probe. The study has…
The repton model is a simple model of the "reptation" motion by which DNA diffuses through a gel during electrophoresis. In this paper we show that the model can be mapped onto a system consisting of two types of particles with hard-sphere…
We have theoretically studied the effect of disorder on ultracold alkaline-earth atoms governed by the Kondo lattice model in an optical lattice via simplified double-well model and hybridization mean-field theory. Disorder-induced…
We consider a system of two coupled parabolic PDEs introduced in [1] to model motility of eukaryotic cells. We study the asymptotic behavior of solutions in the limit of a small parameter related to the width of the interface in phase field…
The coherent superposition of two-atomic levels induced by coherent population trapping is employed in a standard $\Lambda$ type scheme to form a tripod-like system. A weak probe pulse scanning across the system is shown to experience a…
Propagation of a weak Gaussian probe pulse through a closed loop $\Lambda$ system with permanent dipole moments (PDMs) is investigated in presence of a strong control field along with a third field. The presence of PDMs allows multi photon…
Using an experimental work on "stopped light" as an example, we show how a classical phenomenon of linear optics - interference of polarized light - can imitate the effect of electromagnetically induced transparency.
The effects of mid-range repulsion in Lattice Boltzmann models on the coalescence/breakup behaviour of single-component, non-ideal fluids are investigated. It is found that mid-range repulsive interactions allow the formation of spray-like,…
The motion of ionic solutes and charged particles under the influence of an electric field and the ensuing hydrodynamic flow of the underlying solvent is ubiquitous in aqueous colloidal suspensions. The physics of such systems is described…
Experiments show that the movement of eukaryotic cells is regulated by a process of phase separation of two competing enzymes on the cell membrane, that effectively amplifies shallow external gradients of chemical attractant. Notably, the…