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During the synthesis of integral membrane proteins (IMPs), the hydrophobic amino acids of the polypeptide sequence are partitioned mostly into the membrane interior and hydrophilic amino acids mostly into the aqueous exterior. We analyze…

Soft Condensed Matter · Physics 2015-05-13 Karim Wahba , David J. Schwab , Robijn Bruinsma

The slow flow of amorphous solids exhibits striking heterogeneities: swift localised particle rearrangements take place in the midst of a more or less homogeneously deforming medium. Recently, experimental as well as numerical work has…

Soft Condensed Matter · Physics 2014-03-04 Alexandre Nicolas , Joerg Rottler , Jean-Louis Barrat

Direct numerical simulations are used to investigate the individual dynamics of large spherical particles suspended in a developed homogeneous turbulent flow. A definition of the direction of the particle motion relative to the surrounding…

Fluid Dynamics · Physics 2015-06-16 Mamadou Cisse , Holger Homann , Jeremie Bec

The Phase-Field Method (PFM) is employed to simulate two-phase flows with the fully-coupled Cahn-Hilliard-Navier-Stokes (CHNS) equations governing the temporal evolution. The methodology minimizes the total energy functional, accounting for…

In mesoscopic and nanoscale systems at low temperatures, charge carriers are typically not in thermal equilibrium with the surrounding lattice. The resulting, non-equilibrium dynamics of electrons has only begun to be explored.…

Mesoscale and Nanoscale Physics · Physics 2015-12-08 Tineke L. van den Berg , Fredrik Brange , Peter Samuelsson

We construct a coarse-grained effective two-dimensional (2d) hydrodynamic theory as a theoretical model for a coupled system of a fluid membrane and a thin layer of a polar active fluid in its ordered state that is anchored to the membrane.…

Soft Condensed Matter · Physics 2012-11-15 Niladri Sarkar , Abhik Basu

Turbulent flows frequently accompany physical, chemical and biological processes, such as mixing, two-phase flow, combustion and even foraging by bacteria and plankton larvae, all of which are in principle subject to thermal fluctuations…

Fluid Dynamics · Physics 2021-07-08 Dmytro Bandak , Gregory L. Eyink , Alexei Mailybaev , Nigel Goldenfeld

Homogeneous and isotropic turbulent fields obtained from two DNS databases (with $\mbox{Re}_\lambda$ equal to 150 and 418) were seeded with point particles that moved with the local fluid velocity to obtain Lagrangian pressure histories.…

Fluid Dynamics · Physics 2020-01-29 Mehedi Bappy , Pablo M. Carrica , Gustavo C. Buscaglia

The statistical properties of physical systems in thermal equilibrium are blatantly different from their far-from-equilibrium counterparts. In the latter, fluctuations often dominate the dynamics and might cluster in ordered patterns in the…

Turbulence is ubiquitous in plasmas, leading to rich dynamics characterized by irregularity, irreversibility, energy fluctuations across many scales, and energy transfer across many scales. Another fundamental and generic feature of…

Plasma Physics · Physics 2017-02-14 Vladimir Zhdankin , Stanislav Boldyrev , Dmitri A. Uzdensky

Recent experiments on liquid water show collective dipole orientation fluctuations dramatically slower then expected (with relaxation time $>$ 50 ns) [D. P. Shelton, Phys. Rev. B {\bf 72}, 020201(R) (2005)]. Molecular dynamics simulations…

Soft Condensed Matter · Physics 2009-11-11 Pradeep Kumar , Giancarlo Franzese , Sergey V. Buldyrev , H. Eugene Stanley

We study, by means of computer simulations, the crystal-melt interface of three different systems: hard-spheres, Lennard Jones and the TIP4P/2005 water model. In particular, we focus on the dynamics of surface waves. We observe that the…

Chemical Physics · Physics 2014-10-02 Jorge Benet , Luis G. MacDowell , Eduardo Sanz

We use molecular dynamics simulations in two dimensions to investigate the possibility that a core-softened potential can reproduce static and dynamic anomalies found experimentally in liquid water: (i) the increase in specific volume upon…

Soft Condensed Matter · Physics 2009-10-31 A. Scala , M. Reza Sadr-Lahijany , N. Giovambattista , S. V. Buldyrev , H. E. Stanley

The article reviews recent developments in the theory of fluctuations and correlations of energy levels and eigenfunction amplitudes in diffusive mesoscopic samples. Various spatial geometries are considered, with emphasis on…

Disordered Systems and Neural Networks · Physics 2009-10-31 Alexander D. Mirlin

Low Reynolds number direct simulations of large populations of hydrodynamically interacting swimming particles confined between planar walls are performed. The results of simulations are compared with a theory that describes dilute…

Fluid Dynamics · Physics 2015-05-13 Juan P. Hernandez-Ortiz , Patrick T. Underhill , Michael D. Graham

Observing finite regions of a bigger system is a common experience, from microscopy to molecular simulations. In the latter especially, there is ongoing interest in predicting thermodynamic properties from tracking fluctuations in finite…

Soft Condensed Matter · Physics 2023-02-08 Thê Hoang Ngoc Minh , Benjamin Rotenberg , Sophie Marbach

We study experimentally the thermal fluctuations of energy input and dissipation in a harmonic oscillator driven out of equilibrium, and search for Fluctuation Relations. We study transient evolution from the equilibrium state, together…

Statistical Mechanics · Physics 2007-11-28 Sylvain Joubaud , Nicolas Garnier , Sergio Ciliberto

Cells modify their volume in response to changes in osmotic pressure but it is usually assumed that other active shape variations do not involve significant volume fluctuations. Here we report experiments demonstrating that water transport…

We describe the random motion of a particle immersed in a thermally fluctuating medium and harmonically trapped at a certain distance from a wall. The medium, modeled by a Gaussian field with a tunable correlation length $\xi$, is linearly…

Statistical Mechanics · Physics 2025-11-27 Marcin Piotr Pruszczyk , Andrea Gambassi

We study the energy flow between a one dimensional oscillator and a chaotic system with two degrees of freedom in the weak coupling limit. The oscillator's observables are averaged over an initially microcanonical ensemble of trajectories…

Chaotic Dynamics · Physics 2015-06-26 M. V. S. Bonanca , M. A. M. de Aguiar
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