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This paper addresses the equal circle packing problem, and proposes an efficient Quasi-physical Quasi-human (QPQH) algorithm. QPQH is based on a modified Broyden-Fletcher-Goldfarb-Shanno (BFGS) algorithm which we call the local BFGS and a…

Computational Geometry · Computer Science 2017-04-14 Kun He , Hui Ye , Zhengli Wang , Jingfa Liu

Collective behaviors such as swarming, chemical signaling, and clustering are fundamental to biological microorganisms, enabling hierarchical colony formation, coordinated motion, and enhanced nutrient accessibility crucial for their…

Soft Condensed Matter · Physics 2025-02-12 Sobiya Ashraf , Pawan Kumar , Prateek Dwivedi , Frédéric Blanc , Dipin Pillai , Rahul Mangal

Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model we assume that we have access to one versus all queries that…

Data Structures and Algorithms · Computer Science 2011-05-10 Konstantin Voevodski , Maria-Florina Balcan , Heiko Roglin , Shang-Hua Teng , Yu Xia

Half-Heuslers are a promising family for thermoelectric (TE) applications, yet only a small fraction of their potential chemistries has been experimentally explored. In this work, we introduce a distinct computational high-throughput…

Materials Science · Physics 2025-01-22 Angela Pak , Kamil Ciesielski , Maria Wróblewska , Eric S. Toberer , Elif Ertekin

Considering the issue of estimating small probabilities p, ie. measuring a rare domain F = {x | g(x) > q} with respect to the distribution of a random vector X, Multilevel Splitting strategies (also called Subset Simulation) aim at writing…

Computation · Statistics 2015-09-10 Clément Walter

This article addresses the problem of efficient Bayesian inference in dynamic systems using particle methods and makes a number of contributions. First, we develop a correlated pseudo-marginal (CPM) approach for Bayesian inference in state…

Methodology · Statistics 2016-12-22 P. Choppala , D. Gunawan , J. Chen , M. -N. Tran , R. Kohn

We determine the propagation properties of a quantum particle in a d-dimensional lattice with hopping disorder, delta-correlated in time. The system is delocalized: the averaged transition probability shows a diffusive behavior. Then,…

Statistical Mechanics · Physics 2007-05-23 G. C. Ferrario , V. G. Benza

Cosmological simulations are essential for inferring cosmological and galaxy population properties based on forward-modelling, but this typically requires finding the population of (sub)haloes and galaxies that they contain. The properties…

Cosmology and Nongalactic Astrophysics · Physics 2025-09-04 Victor J. Forouhar Moreno , John Helly , Robert McGibbon , Joop Schaye , Matthieu Schaller , Jiaxin Han , Roi Kugel , Yannick M. Bahe

We show that the general and numerically exact Hierarchy of Pure States method (HOPS) is very well applicable to calculate the reduced dynamics of an open quantum system. In particular we focus on environments with a sub-Ohmic spectral…

Quantum Physics · Physics 2017-10-24 Richard Hartmann , Walter T. Strunz

We study a two-lane two-species exclusion process inspired by Lin et al. (C. Lin et al. J. Stat. Mech., 2011), that exhibits a non-equilibrium pulsing phase. Particles move on two parallel one-dimensional tracks, with one open and one…

Statistical Mechanics · Physics 2017-03-31 Sarah Klein , Cécile Appert-Rolland , Martin R. Evans

In particle systems subject to a nonuniform drive, particle migration is observed from the driven to the non--driven region and vice--versa, depending on details of the hopping dynamics, leading to apparent violations of Fick's law and of…

Statistical Mechanics · Physics 2019-09-04 Emilio N. M. Cirillo , Matteo Colangeli , Ronald Dickman

The schooling behavior of fish can be studied through simulations involving a large number of interacting particles. In such systems, each individual particle is guided by behavior rules, which include aggregation towards a centroid,…

Populations and Evolution · Quantitative Biology 2023-10-25 S. Arabeei , S. Subbey

In this paper, we propose a new fuzzy clustering algorithm based on the mode-seeking framework. Given a dataset in $\mathbb{R}^d$, we define regions of high density that we call cluster cores. We then consider a random walk on a…

Machine Learning · Statistics 2016-06-23 Thomas Bonis , Steve Oudot

We study the transport properties of a system of active particles moving at constant speed in an heterogeneous two-dimensional space. The spatial heterogeneity is modeled by a random distribution of obstacles, which the active particles…

Biological Physics · Physics 2013-10-23 Oleksandr Chepizhko , Fernando Peruani

We provide a rigorous derivation of a class of double-hybrid approximations, combining Hartree-Fock exchange and second-order Moller-Plesset correlation with a semilocal exchange-correlation density functional. These double-hybrid…

Chemical Physics · Physics 2011-02-21 Kamal Sharkas , Julien Toulouse , Andreas Savin

Poisson log-linear models are ubiquitous in many applications, and one of the most popular approaches for parametric count regression. In the Bayesian context, however, there are no sufficient specific computational tools for efficient…

Computation · Statistics 2022-09-02 Laura D'Angelo , Antonio Canale

We present a cluster-based density-functional approach to model charge transport through molecular and atomic contacts. The electronic structure of the contacts is determined in the framework of density functional theory, and the parameters…

Mesoscale and Nanoscale Physics · Physics 2008-12-04 F. Pauly , J. K. Viljas , U. Huniar , M. Hafner , S. Wohlthat , M. Burkle , J. C. Cuevas , G. Schon

We introduce two models of biological aggregation, based on randomly moving particles with individual stochasticity depending on the perceived average population density in their neighbourhood. In the first-order model the location of each…

Dynamical Systems · Mathematics 2012-02-22 Martin Burger , Jan Haskovec , Marie-Therese Wolfram

The theory community has proposed several new heap variants in the recent past which have remained largely untested experimentally. We take the field back to the drawing board, with straightforward implementations of both classic and novel…

Data Structures and Algorithms · Computer Science 2014-03-04 Daniel H. Larkin , Siddhartha Sen , Robert E. Tarjan

A missing energy discovery is possible at the LHC with the first 100 pb-1 of understood data. We present a realistic strategy to rapidly narrow the list of candidate theories at, or close to, the moment of discovery. The strategy is based…

High Energy Physics - Phenomenology · Physics 2008-11-26 Jay Hubisz , Joseph Lykken , Maurizio Pierini , Maria Spiropulu
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