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Open-source scientific software is effectively closed to modification by its complexity. With recent advances in technology, an agentic AI team led by a single human can now rapidly and robustly modify large codebases and re-open science to…

Software Engineering · Computer Science 2025-12-16 Ling-Hong Hung , Ka Yee Yeung

The landscape of high- and ultra-high-energy astrophysics has changed in the last decade, largely due to the inflow of data collected by large-scale cosmic-ray, gamma-ray, and neutrino observatories. At the dawn of the multimessenger era,…

An invitation to simulation is made into a realizable challenge: the reader is taken from scratch to games with words, to mathematical models, to statistical analysis, to simulation of evolution. No special requirements are needed: we work…

Populations and Evolution · Quantitative Biology 2007-05-23 Jose Rodriguez

In this article we have summarized the status of the system SANC version 1.00. We have implemented theoretical predictions for many high energy interactions of fundamental particles at the one-loop precision level for up to 4-particle…

High Energy Physics - Phenomenology · Physics 2008-11-26 A. Andonov , A. Arbuzov , D. Bardin , S. Bondarenko , P. Christova , L. Kalinovskaya , G. Nanava , W. von Schlippe

We present FORECAST, a new flexible and adaptable software package that performs forward modeling of the output of any cosmological hydrodynamical simulations to create a wide range of realistic synthetic astronomical images. With…

We describe a software package called VPLanet that simulates fundamental aspects of planetary system evolution over Gyr timescales, with a focus on investigating habitable worlds. In this initial release, eleven physics modules are included…

ISICS, originally a C language program for calculating K-, L- and M-shell ionization and X-ray production cross sections from ECPSSR and PWBA theory, has been reengineered into a C++ language class, named ISICSoo. The new software design…

Computational Physics · Physics 2015-05-30 Matej Batic , Maria Grazia Pia , Sam J. Cipolla

Creating scalable, high performance PDE-based simulations requires a suitable combination of discretizations, differential operators, preconditioners and solvers. The required combination changes with the application and with the available…

Mathematical Software · Computer Science 2021-04-19 Jack D. Betteridge , Patrick E. Farrell , David A. Ham

Far from the latest innovations in software development, many organizations still rely on old code written in "obsolete" programming languages. Because this source code is old and proven it often contributes significantly to the continuing…

Software Engineering · Computer Science 2023-09-06 Younoussa Sow , Larisa Safina , Léandre Brault , Papa Ibou Diouf , Stéphane Ducasse , Nicolas Anquetil

We describe the implementation of a new module which can be used to simulate physical systems in which the motion of particles is affected by stochastic forces. Such forces are expected to be present in turbulent circumstellar disks or…

Earth and Planetary Astrophysics · Physics 2022-05-16 Hanno Rein , Nick Choksi

We present the public release of EXP, a basis function expansion C++ library and Python package for running N-body galactic simulations and dynamical discovery. EXP grew out of the need for methodology that seamlessly connects theoretical…

Astrophysics of Galaxies · Physics 2025-05-13 Michael S. Petersen , Martin D. Weinberg

Biologists who want to analyse their single-cell transcriptomics dataset must install and use specialist software via the command line. This is often impractical for non-bioinformaticians. Whilst the popular CELLxGENE software provides an…

Quantitative Methods · Quantitative Biology 2025-03-04 George T. Hall

Since April 2005 a regularly updated stellar neutron cross section compilation is available online at http://nuclear-astrophysics.fzk.de/kadonis. This online-database is called the "Karlsruhe Astrophysical Database of Nucleosynthesis in…

Astrophysics · Physics 2008-06-13 I. Dillmann , R. Plag , C. Domingo-Pardo , M. Heil , F. Käppeler , T. Rauscher , F. -K. Thielemann

Exascale computers will offer transformative capabilities to combine data-driven and learning-based approaches with traditional simulation applications to accelerate scientific discovery and insight. These software combinations and…

We present the simulation framework CRPropa version 3 designed for efficient development of astrophysical predictions for ultra-high energy particles. Users can assemble modules of the most relevant propagation effects in galactic and…

Instrumentation and Methods for Astrophysics · Physics 2016-05-26 Rafael Alves Batista , Andrej Dundovic , Martin Erdmann , Karl-Heinz Kampert , Daniel Kuempel , Gero Müller , Guenter Sigl , Arjen van Vliet , David Walz , Tobias Winchen

We present a numerical code to simulate maps of Galactic emission in intensity and polarization at microwave frequencies, aiding in the design of Cosmic Microwave Background experiments. This Python code builds on existing efforts to…

Cosmology and Nongalactic Astrophysics · Physics 2017-06-21 Ben Thorne , Jo Dunkley , David Alonso , Sigurd Naess

Extreme-scale computational science increasingly demands multiscale and multiphysics formulations. Combining software developed by independent groups is imperative: no single team has resources for all predictive science and decision…

We present SPISEA (Stellar Population Interface for Stellar Evolution and Atmospheres), an open-source Python package that simulates simple stellar populations. The strength of SPISEA is its modular interface which offers the user control…

Solar and Stellar Astrophysics · Physics 2020-09-09 M. W. Hosek , J. R. Lu , C. Y. Lam , A. K. Gautam , K. E. Lockhart , D. Kim , S. Jia

This paper presents a new major release of the program FIESTA (Feynman Integral Evaluation by a Sector decomposiTion Approach). The new release is mainly aimed at optimal performance at large scales when one is increasing the number of…

High Energy Physics - Phenomenology · Physics 2021-02-23 Alexander V. Smirnov

forqs is a forward-in-time simulation of recombination, quantitative traits, and selection. It was designed to investigate haplotype patterns resulting from scenarios where substantial evolutionary change has taken place in a small number…

Populations and Evolution · Quantitative Biology 2013-10-14 Darren Kessner , John Novembre
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