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Applying machine learning to biological sequences - DNA, RNA and protein - has enormous potential to advance human health, environmental sustainability, and fundamental biological understanding. However, many existing machine learning…

Machine Learning · Statistics 2023-04-11 Alan Nawzad Amin , Eli Nathan Weinstein , Debora Susan Marks

Scaling analysis, in which one infers scaling exponents and a scaling function in a scaling law from given data, is a powerful tool for determining universal properties of critical phenomena in many fields of science. However, there are…

Statistical Mechanics · Physics 2015-07-08 Kenji Harada

We propose a theoretical framework of multi-way similarity to model real-valued data into hypergraphs for clustering via spectral embedding. For graph cut based spectral clustering, it is common to model real-valued data into graph by…

Machine Learning · Computer Science 2022-08-17 Shota Saito

The kernel polynomial method (KPM) is a powerful numerical method for approximating spectral densities. Typical implementations of the KPM require an a prior estimate for an interval containing the support of the target spectral density,…

Computational Physics · Physics 2023-09-19 Tyler Chen

The field of computational statistics refers to statistical methods or tools that are computationally intensive. Due to the recent advances in computing power some of these methods have become prominent and central to modern data analysis.…

Methodology · Statistics 2020-04-27 Suneel Babu Chatla , Chun-houh Chen , Galit Shmueli

Graph kernels are kernel methods measuring graph similarity and serve as a standard tool for graph classification. However, the use of kernel methods for node classification, which is a related problem to graph representation learning, is…

Machine Learning · Computer Science 2019-10-08 Yu Tian , Long Zhao , Xi Peng , Dimitris N. Metaxas

In this paper, the flexibility, versatility and predictive power of kernel regression are combined with now lavishly available network data to create regression models with even greater predictive performances. Building from previous work…

Machine Learning · Statistics 2020-11-05 E. Pei , E. Fokoué

We here propose a machine learning approach for monitoring particle detectors in real-time. The goal is to assess the compatibility of incoming experimental data with a reference dataset, characterising the data behaviour under normal…

High Energy Physics - Experiment · Physics 2023-03-10 Gaia Grosso , Nicolò Lai , Marco Letizia , Jacopo Pazzini , Marco Rando , Lorenzo Rosasco , Andrea Wulzer , Marco Zanetti

We consider the problem of improving kernel approximation via randomized feature maps. These maps arise as Monte Carlo approximation to integral representations of kernel functions and scale up kernel methods for larger datasets. Based on…

Machine Learning · Computer Science 2018-10-31 Marina Munkhoeva , Yermek Kapushev , Evgeny Burnaev , Ivan Oseledets

In this paper, we address the problem of reconstructing coverage maps from path-loss measurements in cellular networks. We propose and evaluate two kernel-based adaptive online algorithms as an alternative to typical offline methods. The…

Networking and Internet Architecture · Computer Science 2019-10-11 Martin Kasparick , Renato L. G. Cavalcante , Stefan Valentin , Slawomir Stanczak , Masahiro Yukawa

We review machine learning methods employing positive definite kernels. These methods formulate learning and estimation problems in a reproducing kernel Hilbert space (RKHS) of functions defined on the data domain, expanded in terms of a…

Statistics Theory · Mathematics 2009-09-29 Thomas Hofmann , Bernhard Schölkopf , Alexander J. Smola

A simple but efficient spectral approach for analyzing the community structure of complex networks is introduced. It works the same way for all types of networks, by spectrally splitting the adjacency matrix into a "unipartite" and a…

Physics and Society · Physics 2016-02-05 Bogdan Danila

Kernel estimation techniques, such as mean shift, suffer from one major drawback: the kernel bandwidth selection. The bandwidth can be fixed for all the data set or can vary at each points. Automatic bandwidth selection becomes a real…

Computer Vision and Pattern Recognition · Computer Science 2011-11-10 Aurelie Bugeau , Patrick Pérez

Support vector machines and kernel methods are increasingly popular in genomics and computational biology, due to their good performance in real-world applications and strong modularity that makes them suitable to a wide range of problems,…

Quantitative Methods · Quantitative Biology 2007-05-23 Jean-Philippe Vert

Kernel smoothing is a highly flexible and popular approach for estimation of probability density and intensity functions of continuous spatial data. In this role it also forms an integral part of estimation of functionals such as the…

Methodology · Statistics 2017-07-24 Tilman M. Davies , Jonathan C. Marshall , Martin L. Hazelton

We propose a spherical kernel for efficient graph convolution of 3D point clouds. Our metric-based kernels systematically quantize the local 3D space to identify distinctive geometric relationships in the data. Similar to the regular grid…

Computer Vision and Pattern Recognition · Computer Science 2020-03-24 Huan Lei , Naveed Akhtar , Ajmal Mian

We present a new adaptive kernel density estimator based on linear diffusion processes. The proposed estimator builds on existing ideas for adaptive smoothing by incorporating information from a pilot density estimate. In addition, we…

Statistics Theory · Mathematics 2010-11-12 Z. I. Botev , J. F. Grotowski , D. P. Kroese

Multi-manifold modeling is increasingly used in segmentation and data representation tasks in computer vision and related fields. While the general problem, modeling data by mixtures of manifolds, is very challenging, several approaches…

Computer Vision and Pattern Recognition · Computer Science 2012-10-08 G. Chen , S. Atev , G. Lerman

Graph kernels have been successfully applied to many graph classification problems. Typically, a kernel is first designed, and then an SVM classifier is trained based on the features defined implicitly by this kernel. This two-stage…

In this paper we present the application of a novel methodology to scientific citation and collaboration networks. This methodology is designed for understanding the governing dynamics of evolving networks and relies on an attachment…

Disordered Systems and Neural Networks · Physics 2009-09-29 Gabor Csardi , Katherine Strandburg , Laszlo Zalanyi , Jan Tobochnik , Peter Erdi
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