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We study the problem of graph structure identification, i.e., of recovering the graph of dependencies among time series. We model these time series data as components of the state of linear stochastic networked dynamical systems. We assume…
A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…
We introduce a new class of identifiable DAG models where the conditional distribution of each node given its parents belongs to a family of generalized hypergeometric distributions (GHD). A family of generalized hypergeometric…
Recently there has been increased interest in semi-supervised classification in the presence of graphical information. A new class of learning models has emerged that relies, at its most basic level, on classifying the data after first…
A double-arborescence is a treelike comparability graph with an all-adjacent vertex. In this paper, we first give a forbidden induced subgraph characterization of double-arborescences, where we prove that double-arborescences are precisely…
The Subgraph Isomorphism problem asks, given a host graph G on n vertices and a pattern graph P on k vertices, whether G contains a subgraph isomorphic to P. The restriction of this problem to planar graphs has often been considered. After…
A connected dominating set in a graph is a dominating set of vertices that induces a connected subgraph. Following analogous studies in the literature related to independent sets, dominating sets, and total dominating sets, we study in this…
We state a combinatorial optimization problem whose feasible solutions define both a decomposition and a node labeling of a given graph. This problem offers a common mathematical abstraction of seemingly unrelated computer vision tasks,…
A graph $G$ is {\em matching-decyclable} if it has a matching $M$ such that $G-M$ is acyclic. Deciding whether $G$ is matching-decyclable is an NP-complete problem even if $G$ is 2-connected, planar, and subcubic. In this work we present…
We consider the probability that a spanning tree chosen uniformly at random from a graph can be partitioned into a fixed number $k$ of trees of equal size by removing $k-1$ edges. In that case, the spanning tree is called {\em splittable}.…
Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique,…
We show that if a subset $\Psi$ of the ends of a graph $G$ can be displayed by a tree-decomposition of finite adhesion, then it can also be displayed by a linked such tree-decomposition. This tree-decomposition captures all combinatorial…
A \emph{locally irregular graph} is a graph whose adjacent vertices have distinct degrees. We say that a graph $G$ can be decomposed into $k$ locally irregular subgraphs if its edge set may be partitioned into $k$ subsets each of which…
Phylogenetic networks extend phylogenetic trees to model non-vertical inheritance, by which a lineage inherits material from multiple parents. The computational complexity of estimating phylogenetic networks from genome-wide data with…
One perspective on tree decompositions is that they display (low-order) separations of the underlying graph or matroid. The separations displayed by a tree decomposition are necessarily nested. In 2013, Clark and Whittle proved the…
We introduce a new model of indeterminacy in graphs: instead of specifying all the edges of the graph, the input contains all triples of vertices that form a connected subgraph. In general, different (labelled) graphs may have the same set…
The twin-width of a graph measures its distance to co-graphs and generalizes classical width concepts such as tree-width or rank-width. Since its introduction in 2020 (Bonnet et. al. 2020), a mass of new results has appeared relating twin…
Given a graph $G$, a subgraph $H$ is isometric if $d_H(u,v) = d_G(u,v)$ for every pair $u,v\in V(H)$, where $d$ is the distance function. A graph $G$ is distance preserving (dp) if it has an isometric subgraph of every possible order. A…
A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…
In the present paper a novel graph-based approach to the shape decomposition problem is addressed. The shape is appropriately transformed into a visibility graph enriched with local neighborhood information. A two-step diffusion process is…